Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O24
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 5e-19
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 32 0.36
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 2.5
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 29 3.3
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 29 3.3
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 28 4.4
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 5.8
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 5.8
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 5.8
SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3) 27 7.6
SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 27 7.6
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 7.6
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 91.1 bits (216), Expect = 5e-19
Identities = 55/111 (49%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Frame = +1
Query: 163 ARLIAPAARTVIFSNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKDIDSAAK 339
AR +A RT+ TA +RP + +VP +P + A R FQT+S +D+DSAAK
Sbjct: 49 ARNLAGHGRTLA---TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAK 104
Query: 340 FXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 492
F FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 105 FIGAGAATVGAAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPA 273
+A+T++ S NT LVRPL +P T P +PA
Sbjct: 1211 SAKTIVSSCLNTLLVRPLETIPAPTPTTPTSPA 1243
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 336
+ART++ S T LVRPL P P +PA ++V +T K+ S A
Sbjct: 8 SARTIVSSCLATLLVRPLETTPAPAPTTPTSPATPASVAPIRTPIPLKETPSPA 61
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 31.1 bits (67), Expect = 0.62
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 118 FVSRRTPQNTKMLYAARLIAPAARTVIFS--NTALVRPLAAVPTHTQIVPVAPAQLSAVR 291
F S R T L L++ A+T++ S T LVRPL +P T P +PA ++
Sbjct: 211 FSSFRAALETSSLIEFFLLS--AKTIVSSCLATLLVRPLETIPAPTPTTPTSPATPASGP 268
Query: 292 TFQTTSVTKDIDSAA 336
+T K+ + A
Sbjct: 269 PIRTPIPVKETSTTA 283
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 336
+A+T++ S T LVRPL +P P++PA ++ +T K+ +AA
Sbjct: 626 SAKTIVSSCLATLLVRPLETIPAPAPTKPISPATPASGPPTRTPIPLKETPTAA 679
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPA 273
+A+T++ S T LVRPL +P T P +PA
Sbjct: 98 SAKTIVSSCLATLLVRPLETIPAPTPTTPTSPA 130
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 336
+ART++ S T LVRPL P P +PA ++ +T K+ S A
Sbjct: 15 SARTIVSSCLATLLVRPLETTPAPAPTTPTSPATPASGAPIRTPIPLKETPSPA 68
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 243 CRHCCEWSHKSCVAEDNSPGCRGDQSCGIQHFC--VLRGATTDKIYTLTHT 97
C C EW H C+ S G + ++S GI++ C ++G I L+ T
Sbjct: 62 CDRCDEWFHGDCIGITMSQGRQMEKS-GIEYNCPKCVKGIVQTDIQYLSRT 111
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -1
Query: 264 NWNNLCVCRHCC-EWSHKSCVAEDNSPGCRGDQSCGIQ 154
NW C C ++ + C AED + C G GI+
Sbjct: 652 NWGAFGPCSETCYKYRQRFCTAEDKAANCPGADMFGIE 689
>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 380 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 472
P+R + +PS + + TPPL +C + PS
Sbjct: 283 PQRSMSILPLPSEVRVDTTPPLRGACRYYPS 313
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 380 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 472
P+R + +PS + TPPL +C + PS
Sbjct: 221 PQRSMSILPLPSGARVDTTPPLREACRYYPS 251
>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 ARTVIFS--NTALVRPLAAVPTHTQIVPVAPA 273
A+T++ S T LVRPL +P T P +PA
Sbjct: 203 AKTIVSSCLATLLVRPLETIPAPTLTTPTSPA 234
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = -1
Query: 351 STNEFGSRVNVFGDRG-GLEGAHS**LSRCN--WNNLCV-CRHCCEWSHKSCVAEDNSPG 184
S + VN+ D G L G+HS + + N W+ C+ CE + S S G
Sbjct: 560 SVTTYRGVVNITCDTGFHLIGSHSR-VCQANGTWSGTTTTCKEKCE-RYPSMDVSQCSMG 617
Query: 183 CRGDQSCGIQHFCVLRGATT 124
C DQ C H C G T
Sbjct: 618 CDVDQDCPPNHMCRCDGMQT 637
>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 58 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 98
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 640 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 680
>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 48 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 88
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 639 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 679
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 203 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 243
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 321
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 152 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 192
>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
Length = 451
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 404 SVPSSLVM-PGTPPLNNSCSHMPSWVSPCLRLWVS 505
+VP +++ PG P NN S MPS +SP L +V+
Sbjct: 66 NVPYAVIPNPGVPLGNNFSSVMPSTMSPSLPFFVA 100
>SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 65 KSVTSTKY*FPVCVSVYILSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLL 217
K++++ K+ +C+S+ IL V TQ+C P+ P+ P + Q++
Sbjct: 50 KALSTMKW-SKLCISLGILCVCLTKYTQECSPPKGWQPMTPSERAKKAQIV 99
>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.5 bits (58), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 261 WNNLCVCRHCCEWSHKSCV 205
W C+CR +W H+SC+
Sbjct: 40 WVKPCLCRGTTKWVHQSCL 58
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 27.5 bits (58), Expect = 7.6
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 130 RTPQNTKMLYAARLIAPAARTVIFSNTAL---VRPLA-----AVPTHTQIVPVAPAQLSA 285
+T NT + R I P RT I +N L +RP A A PTH +IVP+ P+ +A
Sbjct: 363 QTRTNTTHVSGTRPILP--RTPITNNQQLRTRIRPEAVPIAPATPTHRRIVPLMPSVSNA 420
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 AARTVIFS--NTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 336
+A+T++ S T LVRPL +P P +PA ++ +T K+ + A
Sbjct: 66 SAKTIVSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIRTPIPLKETPNPA 119
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 312
+N+ ++ PL +VP +T ++P A +A T + V
Sbjct: 78 ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 114
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 202 SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 312
+N+ ++ PL +VP +T ++P A +A T + V
Sbjct: 480 ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 516
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,523
Number of Sequences: 59808
Number of extensions: 365681
Number of successful extensions: 1462
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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