Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O24
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 79 2e-15
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 79 2e-15
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 79 2e-15
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 8.9
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 8.9
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 8.9
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 283 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 462
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 463 YAILGFALSE 492
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 283 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 462
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 463 YAILGFALSE 492
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 79.4 bits (187), Expect = 2e-15
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +1
Query: 283 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 462
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 463 YAILGFALSE 492
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 249 CVCRHCCEWSHKSCV 205
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 312 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDNSPGCRGDQSC 163
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 312 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDNSPGCRGDQSC 163
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 188 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 280
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 270 RCNWNNLCVCRHCCEWSHKSC 208
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 312 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDNSPGCRGDQSC 163
++G +E H CN + L +C C H +C+ E+ GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,122
Number of Sequences: 27780
Number of extensions: 252243
Number of successful extensions: 766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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