Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O24
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   9e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    31   0.38 
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    31   0.38 
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    31   0.51 
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    30   0.89 
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim...    30   0.89 
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac...    28   3.6  
At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c...    27   6.2  
At5g04310.1 68418.m00423 pectate lyase family protein similar to...    27   6.2  
At2g22730.1 68415.m02694 transporter-related low similarity to s...    27   6.2  
At1g69280.1 68414.m07943 expressed protein                             27   6.2  
At1g02580.1 68414.m00209 maternal embryogenesis control protein ...    27   8.3  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 403 FGSLIIGYARNPSLKQQLFSYAILGFALSE 492
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 447 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 271
           F  G+P G T   GT Y  N   G   S     +TN FG  V   G  GG   +    ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315

Query: 270 RCNWNN 253
           R  W N
Sbjct: 316 RNLWGN 321


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 447 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 271
           F  G+P G T   GT Y  N   G   S     +TN FG  V   G  GG   +    ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315

Query: 270 RCNWNN 253
           R  W N
Sbjct: 316 RNLWGN 321


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 252 LCVCRHCCEWSHKSCVAEDNSPGCRGDQSCGIQHFCVL 139
           LC  + C +  H+SCV +D+S    GD    + H C L
Sbjct: 36  LCDFKDCPKVYHESCVEKDSSASKNGDSYICMWHSCYL 73


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 267 CNWNNLCVCRHCCEWSHKSCVAEDNSPGCRGDQSCGIQHFCVLRGATT 124
           CN    C   H  + +  +C    +S GCR  +SC   H   +R  TT
Sbjct: 741 CNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSH--AMRRRTT 786


>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
           similar to BP-80 vacuolar sorting receptor [Pisum
           sativum] GI:1737222
          Length = 618

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -1

Query: 396 SNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVCRHC-CE-- 226
           S TR G ++S+C  + T+     +   GD  GL+      +  C   + C C  C C+  
Sbjct: 478 SETRKGLTFSSCSDSETSGCRCPLGFLGD--GLKCED---IDECKEKSACKCDGCKCKNN 532

Query: 225 WSHKSCVAEDNSPGCRGDQSC 163
           W    C   +NS   + + +C
Sbjct: 533 WGGYECKCSNNSIYMKEEDTC 553


>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
           homology (BAH) domain-containing protein contains Pfam
           domain, PF00628: PHD-finger and PF01426: BAH domain
          Length = 228

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
 Frame = -1

Query: 405 EYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRC----NWNNLCV-C 241
           E +    S SSY+       ++F  R       G  +        +C    N ++L V C
Sbjct: 98  EGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQC 157

Query: 240 RHCCEWSHKSCV 205
             C EW H SC+
Sbjct: 158 EECSEWFHPSCI 169


>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
           cellulase family protein cellulase (EC 3.2.1.4)
           precursor - Xanthomonas campestris pv. campestris,
           PIR:JH0158
          Length = 488

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 438 GVPGITNDEGTEYRSNTRSGSSYSNCRCA 352
           G P I ++ GT+ R    SG+ Y NC  A
Sbjct: 304 GFPLILSEFGTDQRGGDMSGNRYMNCLVA 332


>At5g04310.1 68418.m00423 pectate lyase family protein similar to
           pectate lyase  GP:14531296 from [Fragaria x ananassa]
          Length = 518

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 441 GGVPGITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGG 301
           G  PGITN  GT  R  ++SG +       S ++ G    +FG+  G
Sbjct: 446 GSFPGITNGGGTITRGYSKSGPAGGG--SGSDSDDGLFTLIFGNNSG 490


>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 302 VWKVRTADN*AGATGTICVCVGTAASG----RTRAVLLKITVLAAGAINLAAYSIFVF*G 135
           ++K++ AD   GA   IC  VGT + G    R  A +     L +GA  L A   F    
Sbjct: 327 IYKMKNADMIFGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFT 386

Query: 134 VRRLTKYI 111
           ++ L  +I
Sbjct: 387 LKSLYGFI 394


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 267 CNWNNLCVCRHCCEWSHKSC 208
           C++N+ C    CC WS  SC
Sbjct: 344 CDYNSSCGWLFCCHWSCWSC 363


>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
           MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
           GI:3089625 from [Arabidopsis thaliana]; contains Pfam
           profile PF00856: SET domain
          Length = 689

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  FQCVLVYIFCQSSHPSKHKNAVCRKIDR-PCSQDCYLQQHS 212
           F C +   +   S  S+ K+++    DR PCS+ CYL+  S
Sbjct: 275 FDCHMHEKYEPESRSSEDKSSLFEDEDRQPCSEHCYLKVRS 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,911
Number of Sequences: 28952
Number of extensions: 224058
Number of successful extensions: 682
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)