Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O23
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 131 7e-32
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 97 1e-21
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 80 2e-16
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 39 4e-04
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 38 7e-04
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 37 0.002
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 36 0.003
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 36 0.005
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 30 0.25
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 28 1.0
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 1.0
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 27 1.8
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.8
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.3
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.3
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 4.1
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 26 4.1
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 4.1
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 26 4.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 5.4
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 25 9.5
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi... 25 9.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 131 bits (316), Expect = 7e-32
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Frame = +3
Query: 18 SEFSIENLVAFAKDLIGGKLEPFVKSEAVPESNDGPVKVAVGKNFKELVTDSDRDALVEF 197
+E + + + F D + GKL+P +KS+ +PES + V V V NF ++V D +D LVEF
Sbjct: 322 TELTAKAMTKFVGDFVDGKLQPKIKSQPIPESQEDLV-VLVADNFDDIVMDETKDVLVEF 380
Query: 198 YAPWCGHCQKLTPIWEELGEKLKDE-DVDIVKIDATANDWPKSQYDVSGFPTIYWKPKDS 374
YAPWCGHC+ L P +E+L E+ D+ +V + KIDAT ND S +SGFPTI + +
Sbjct: 381 YAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVS---ISGFPTIMFFKAND 437
Query: 375 SKKPVRYNGGRAVEDFIKYVSEQASSE 455
PVRY G R +ED ++ + AS E
Sbjct: 438 KVNPVRYEGDRTLEDLSAFIDKHASFE 464
Score = 75.4 bits (177), Expect = 5e-15
Identities = 34/106 (32%), Positives = 63/106 (59%)
Frame = +3
Query: 144 KNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIVKIDATANDWPKS 323
+ EL+T +D+ +V+FYAPWCGHC+ L P +E ++L+ + + +V++D T S
Sbjct: 30 EGLNELIT-ADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCS 88
Query: 324 QYDVSGFPTIYWKPKDSSKKPVRYNGGRAVEDFIKYVSEQASSELK 461
+Y + G+PT+ + K+ +Y+G R + +KY+ +Q +K
Sbjct: 89 EYSIRGYPTL--NVFKNGKQISQYSGPRKHDALVKYMRKQLLPTVK 132
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 97.5 bits (232), Expect = 1e-21
Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Frame = +3
Query: 147 NFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDE-DVDIVKIDATANDWPKS 323
NF ++V D +D LVEFYA WCG+C++L P +E LG+ K+E +V+IVKI+A
Sbjct: 149 NFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGR 208
Query: 324 QYDVSGFPTIYWKPKDSSKKPVRYNGGRAVEDFIKYVSEQASSE 455
++V+ FPTI + PKD KP Y G R++E I+Y+++++ ++
Sbjct: 209 LHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQ 252
Score = 95.5 bits (227), Expect = 4e-21
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +3
Query: 120 GPVKVAVGKNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKD-EDVDIVKID 296
G V++ + + S + AL+EFYA WCGHC+ L P++EELG +D DV I KID
Sbjct: 21 GVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKID 80
Query: 297 ATANDWPKSQYDVSGFPTIYWKPKDSSKKPVRYNGGRAVEDFIKYVSEQ 443
A + +Y ++GFPT+ W P D S +PV+Y+ R V+ ++VSE+
Sbjct: 81 ADTHSDVADKYHITGFPTLIWFPPDGS-EPVQYSNARDVDSLTQFVSEK 128
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 79.8 bits (188), Expect = 2e-16
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +3
Query: 144 KNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKD-EDVDIVKIDATANDWPK 320
KNF++ V + +LV FYAPWCG+C+KL P +++L L V V DA N
Sbjct: 39 KNFRKFVK-AKGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVC 97
Query: 321 SQYDVSGFPTI---YWKPKDSSKKPVRYNGGRAVEDFIKYVSEQASSELK 461
SQY V GFPTI Y K SS YNG R+ + K+VS+ S++K
Sbjct: 98 SQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 129 KVAVGKNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIVKIDATAN 308
+V+ FK +V D+ +V+F+A WCG C+ + P +E+ D +K+D
Sbjct: 4 QVSDSSEFKSIVCQ-DKLVVVDFFATWCGPCKAIAPKFEQFSNTY--SDATFIKVDVDQL 60
Query: 309 DWPKSQYDVSGFPTIY 356
++ V P+ +
Sbjct: 61 SEIAAEAGVHAMPSFF 76
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 38.3 bits (85), Expect = 7e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 171 SDRDALVEFYAPWCGHCQKLTPIWEELGEK 260
+D+ +V+FYA WCG C+ L P E+L E+
Sbjct: 34 ADKVTVVDFYADWCGPCKYLKPFLEKLSEQ 63
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 37.1 bits (82), Expect = 0.002
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 189 VEFYAPWCGHCQKLTPIWEELGEKLKDE 272
+++Y P CG C++L P+W+ + EK K++
Sbjct: 47 IKYYLPSCGACKRLGPMWDNMVEKAKEQ 74
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +3
Query: 189 VEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIVKIDATANDWPKSQYDVSGFPTIYWKPK 368
V+ YA WCG C+ ++P++ +L K K++ S V PT +
Sbjct: 24 VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83
Query: 369 DSSKKPVRYNGGRAVEDFIKYVSEQAS 449
+ +A+++ + +S +A+
Sbjct: 84 GKQIDMLTGANPQALKEKVALISSKAT 110
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 126 VKVAVGKNFKELVTDS-DRDALVEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIVKIDAT 302
V++ + F+E++ + ++ L+ FYAPW C+++ ++++ + K + +KI+A
Sbjct: 3 VEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTK--NAVFLKIEAE 60
Query: 303 ANDWPKSQYDVSGFP 347
+DV+ P
Sbjct: 61 KFSDIAESFDVNAVP 75
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 29.9 bits (64), Expect = 0.25
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +3
Query: 114 NDGPVKVAVGKNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIVKI 293
+DG V E+ R+A +EF A W GH + P + L L E IVK+
Sbjct: 965 HDGKVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSENKIP-YTSLSNHLSTE---IVKL 1020
Query: 294 DATANDWPKSQYDVSGF 344
D ++ K DV GF
Sbjct: 1021 DHDIYNYEKLWADV-GF 1036
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 213 GHCQKLTPIWEELGEKLKDEDVDIVKIDATANDWPKSQYDVSGFPTIYWKPKDSSKKPVR 392
G + L+P W+++ + KD ++ +D P+ +YD+ F W K SK P
Sbjct: 308 GEFEFLSPWWDDISDSAKDLITHLLTVD------PRERYDIHQFFQHPW-IKGESKMPEN 360
Query: 393 Y 395
+
Sbjct: 361 F 361
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 1.0
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -3
Query: 196 NSTRASRSLSVTSSLKFLPTATLT--GPSLLSGTASDLTKGSSLPPMRSFAKATRFSMLN 23
+S+ AS + S TSS + + TLT PS +S T S + S++ S + T S+ +
Sbjct: 114 SSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT--SLSS 171
Query: 22 SDFMTLV 2
S F T++
Sbjct: 172 SGFSTVL 178
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 181 SRSLSVTSSLKFLPTATLTGPSLLSGTAS 95
++S + +S KFLPT+ +TG ++S T S
Sbjct: 302 TKSNYLDASFKFLPTSRITGIPIISTTKS 330
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -3
Query: 196 NSTRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLTKGSSLPPMR 59
+S+ RS S+++ LK + PSLLSG+ ++ ++ SS P +R
Sbjct: 476 SSSSRRRSQSLSAMLK-TSNPYMPSPSLLSGSLANSSEHSSSPRLR 520
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 163 TSSLKFLPTATLTGPSLLSGTASDLTKGSSLPPMRS 56
TS++ F+P + ++G +L+ +SDL K P + S
Sbjct: 354 TSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLS 389
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 108 ESNDGPVKVAVGKNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDED 275
+ + P + V K F E + L+ + K+TPIW + +K K ED
Sbjct: 120 DKHKNPFLIYVKKRFAECFDKNPDLCLIVYSKLEVETLAKITPIWINVAKKNKKED 175
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 120 GPVKVAVGKNFKELVTDSDRDALVEFYAPWCGHCQKLTPIWEELGEKLKDEDVDIV 287
GP + G + T+SD + APW +++ + EE ++K ++DI+
Sbjct: 427 GPSISSSGASSSAATTNSDTTEQI-LEAPWLRKTEQIAVVHEEHPAQIKKSEIDIL 481
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 193 STRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLTKGSSL 71
S A+ S +SSL +AT T SL S AS+ SSL
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSL 227
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = -3
Query: 196 NSTRASRSLSVTSS------LKFLPTATLTGPSLLSGTASDLTKGSSLP 68
NST A+ S S TSS LP++T + L S ++ T SS P
Sbjct: 259 NSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTP 307
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 196 NSTRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLTKGSSL 71
+S+ AS S + T+S PT++ T SL S AS+ SSL
Sbjct: 156 SSSLASSSTNSTTSAT--PTSSATSSSLSSTAASNSATSSSL 195
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -3
Query: 211 HHGA*NSTRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLT 86
H + +S +S+ L TSS+ PT++++ S S T+S ++
Sbjct: 328 HSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTSSAIS 369
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 275 ILIFQLFTQLFPDWRQFLTVSAPRRVELDESVPVAVGDQLLEVLTDCHFN 126
ILIF FTQ+ L + LD S PV QL++ D H N
Sbjct: 783 ILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLID---DFHTN 829
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 500 FICLLGIALSVPALEFATGLFRYVFDEVFYSATTIVSDW 384
F L G L + ++ L +Y DE YS+ T S+W
Sbjct: 282 FFSLSGKLLRLDDVQTPVLLLKYADDETEYSSNTAPSNW 320
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 214 PHHGA*NSTRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLTKGSSLPPMRSFAKATRF 35
P G A+R S T S++ T PS + + + PP+ S ATR
Sbjct: 522 PLDGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPAPPLPSHPMATRK 581
Query: 34 SMLNSDFM 11
S+ +++ +
Sbjct: 582 SLSSTNLV 589
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 75 LEPFVKSEAVPESNDGPVKVAVGKNFKELVTDSDRD 182
+ PF + V S DG + V +NFK+ + ++D
Sbjct: 154 ISPFEERYFVATSGDGVLSVIDARNFKKPILSEEQD 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 436 LNKPVANSRAGTERAMPRRQMK 501
LNK +N +G +RAMP R +K
Sbjct: 93 LNKNESNQSSGVKRAMPFRVLK 114
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 177 RDALVEFYAPWCGHCQKLTPIWEELGEKLK---DEDVDIV-KIDAT 302
R A+ E WC CQ+ ++ KLK D DI+ +I++T
Sbjct: 80 RKAIAEQLQLWCQACQENADLYRSQQRKLKSRWDSQTDILSQIEST 125
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 406 RPPLYLTGFLELSLGFQ 356
RPPLY+T F LG Q
Sbjct: 49 RPPLYVTKFFGFELGAQ 65
>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
Mug66|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 233 RQFLTVSAPRRVELDESVPVAVGDQLLEVL 144
RQF TV A LD +VP VG +L E L
Sbjct: 31 RQFSTVPARTIDVLDITVPTLVGAELNEQL 60
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 321 SQYDVSGFPTIYWKPKDSSKKPVRYNGGRAVEDFIKYVSEQASSELKGWDRKGNAKKTN 497
S Y G T +KP + +KKP + R+ S++ ++ L+ W+ K N
Sbjct: 325 SIYVPEGIDTDQFKPIEVNKKPKKEKRARSSNYIDVPASKKVATSLQRWNDAQKELKDN 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,428
Number of Sequences: 5004
Number of extensions: 44049
Number of successful extensions: 195
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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