Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O23
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   3.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 417 DFIKYVSEQASSELKGWDRKGNAKKTNEE 503
           D I+   + +SS ++GW+ +    + NEE
Sbjct: 330 DEIRTRYKDSSSSVEGWENRATIPELNEE 358


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 94  PKRCRRVTMAQLKWQS 141
           P R RRVT   L WQS
Sbjct: 56  PLRHRRVTCDVLSWQS 71


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 283 SLKSTRQPTTGRNLSTTCLVSQPSTGNLRTAPRN 384
           S+   R P++ R+ S + L SQP   + +   +N
Sbjct: 31  SIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKN 64


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 196 NSTRASRSLSVTSSLKFLPTATLTGPSLLSGTASDLTKGSSLPP 65
           +S+ +SRS     S++  P A     + L+GT   L     LPP
Sbjct: 448 DSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCLPP 491


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 102 VPESNDGPVKVAVGKNFKE 158
           VPES DGP  V++    +E
Sbjct: 123 VPESRDGPPSVSLSSPPRE 141


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 164 HRQRPGRSRRVLRAVVRTLSETDA 235
           H + PGR+  +LRA   +++E ++
Sbjct: 110 HSRLPGRNFNLLRADANSVNELES 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,706
Number of Sequences: 438
Number of extensions: 2801
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)