Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O22
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_54952| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-16)                 27   8.2  

>SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 124 AVVYVILSITCF*ILYRLSALTTI 53
           A +YV +SI C  I Y+L +L TI
Sbjct: 201 AAIYVSISIVCALIFYKLRSLETI 224


>SB_54952| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-16)
          Length = 357

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 154 YKAHYVTKYIILVFLCTHIYVTYVXXXXXXXXXXSLTNRDQDQSLTTG 297
           YK  Y+   +ILVF C +++ T+V            T  D+  + T G
Sbjct: 242 YKLSYMAASVILVFFCPYLF-TFVYTSLIVGNFIDTTIADEYTNRTVG 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,548
Number of Sequences: 59808
Number of extensions: 331247
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)