Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O22
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    30   1.0  
U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    27   7.2  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    27   7.2  

>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 457 YLKDYSFLLRKAQDYYSGFAPTSNDTVA 374
           +L+DY+FL    ++Y  G  PTS+DT++
Sbjct: 64  FLQDYAFLRNAVEEYLDG-KPTSSDTIS 90


>U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical
           protein F47D12.7 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 259 LTNRDQDQSLTTGQFRFYNAPIRGDR*TEITIAQWLRSPPPCRSKWVQIR 408
           L  + +D++     +  +N+P++ DR T+     + R P P  +K+  IR
Sbjct: 210 LNLKSEDETTVVVNWIKHNSPLQSDRLTQFAQRNFSRRPQPDATKYEVIR 259


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 YTHIRNIRNLVFVYNYIIVSDQP*PRPVTYDWTVQVLQRTDK 326
           Y H+ N+R ++   N   V  +  PRPV Y    +VL +  K
Sbjct: 115 YEHLENVRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFK 156


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 YTHIRNIRNLVFVYNYIIVSDQP*PRPVTYDWTVQVLQRTDK 326
           Y H+ N+R ++   N   V  +  PRPV Y    +VL +  K
Sbjct: 107 YEHLENVRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFK 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,544
Number of Sequences: 27780
Number of extensions: 246415
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)