Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O21
         (438 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7TYQ8 Cluster: PEPTIDE SYNTHETASE MBTF; n=16; Mycobact...    31   8.1  
UniRef50_A6QKC9 Cluster: Transcriptional antiterminator BglG fam...    31   8.1  

>UniRef50_Q7TYQ8 Cluster: PEPTIDE SYNTHETASE MBTF; n=16;
           Mycobacterium|Rep: PEPTIDE SYNTHETASE MBTF -
           Mycobacterium bovis
          Length = 1461

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 420 RVVLETRAFFGG---LVEEKAKVLVDHSAKSASQFRILAPCHYLHLTTLVYHNY 268
           RV L+ RA  GG   +++ +  +L DHS    ++FR +A    +  T LVY N+
Sbjct: 312 RVRLDARATVGGQCAVLQRQFAMLRDHSYLGFNEFRAIAGIGEMFDTLLVYENF 365


>UniRef50_A6QKC9 Cluster: Transcriptional antiterminator BglG family
           protein; n=12; Staphylococcus aureus|Rep:
           Transcriptional antiterminator BglG family protein -
           Staphylococcus aureus (strain Newman)
          Length = 624

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 251 RHQNYIINSQIWQNIELNYKTKT*LNKIAPSTLETCDRSTRHVPGYIEVLIFSMFSYLVL 72
           R+  ++INS    +I ++ K+K      +  TLET      H+  Y E L+ SM   L++
Sbjct: 37  RNDIHVINSNFMDDIIVSIKSKGYQLNTSQYTLETITERYTHIQSYKEKLLLSMAYQLLM 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,046,766
Number of Sequences: 1657284
Number of extensions: 7194638
Number of successful extensions: 15485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15484
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)