Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O21
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    30   0.14 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   2.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   3.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   8.9  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    24   8.9  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 402 RAFFGGLVEEKAKVLVDHS-AKSASQFRILAPCHYLHLTTLVYHNYTI 262
           R  F G +EE  K  +++  A+  S   + A  HY+   TL+Y+ Y +
Sbjct: 250 RVRFAGSLEELPKFSLEYQLAQPISTVDMYAQVHYIRFNTLLYYRYQL 297


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 111 DVPWNVTCGAITRFERAWRDFIQSCFRL-VI*FNILPYLTIY 233
           D+ W   C    R  R W  F+ +  R+ ++  ++  Y T+Y
Sbjct: 400 DIQWQRVCYKSFRESRTWLHFLHNFSRIWILHISVFWYFTVY 441


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 173 KIAPSTLETCDRSTRHVPGYIEVLIFSMFSYL 78
           K APS  +  DR  R +   I VL+F  F+Y+
Sbjct: 387 KQAPSFFKYTDRLGRPLLAMIVVLLFGFFAYI 418


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 134 TRHVPGYIEVLIFSMFSYLVLSL*YTIL 51
           TRH+  YIE  +  + + LVLSL + IL
Sbjct: 10  TRHLLPYIEHSVIPIIALLVLSLIFYIL 37


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 210  ILPYLTIYYVILVAFYVI 263
            +L Y T+Y+ + +AF+V+
Sbjct: 1674 VLRYATLYFSLFIAFFVL 1691


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -2

Query: 287 HLCIIITLYDVKRHQNYIINSQIWQNIELNYKTKT*LNKIAPSTLETCDRSTRHV 123
           H  + +  +   +  ++I+NS +   +++  +T     KI    LE   +STR++
Sbjct: 683 HPLVFVQAHSFPKIDSFILNSTVGPRVKIVLETIEDSFKIDSHLLELLKKSTRYL 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,033
Number of Sequences: 5004
Number of extensions: 32888
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)