Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O21
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               29   2.2  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             29   2.2  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   28   2.9  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 27   6.8  

>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 143 HTFRACLARFYSVMFSSCNLIQY 211
           HT R+C+ R +S +F SC+ + Y
Sbjct: 370 HTKRSCICRRFSALFHSCDQLCY 392


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 143 HTFRACLARFYSVMFSSCNLIQY 211
           HT R+C+ R +S +F SC+ + Y
Sbjct: 370 HTKRSCICRRFSALFHSCDQLCY 392


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 390 GGLVEEKAKVLVDHSAKSASQFRILAPCHYLHLTT 286
           GG+V EKA++  + + ++  + R+L P  Y+ + T
Sbjct: 818 GGIVHEKAEINNNEAKENVDRTRVLLPAKYVTVNT 852


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 432  KFIDRVV-LETRAFFGGLVEEKAKVLVDHSAKSASQFRILAPCH 304
            KF+ + V + T    GG  E+K K+L++H A   S +    PCH
Sbjct: 1812 KFLPKTVPIGTTIQMGGGGEKKIKILIEHGAFLVSSY----PCH 1851


>SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 135 HTSRSRVHRSFNFQHVQLSR 76
           HTS SRV + +N++HV L R
Sbjct: 2   HTSTSRVPKPYNYKHVLLDR 21


>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 49  LNIVYHKER-TR*LNMLKIKTSMYPGT*R-VERSHVSSVLGAILF 177
           +N+V+ + R TR L+ L  KTS YPG    V R H ++ + + L+
Sbjct: 336 INLVHRRHRNTRVLSTLTSKTSAYPGNINLVHRRHTNTRVLSTLY 380


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 262 YSVIMIHKCSQV*IMTRSENSELT 333
           + V+ +H+ SQV  +TRS++S LT
Sbjct: 464 FQVVPLHQVSQVDTLTRSKDSSLT 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,654
Number of Sequences: 59808
Number of extensions: 234063
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)