Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O21
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-3|AAY86217.1|  246|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U23529-3|AAY86217.1|  246|Caenorhabditis elegans Hypothetical
           protein C15B12.9 protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 129 SRSRVHRSFNFQHVQLSRSLFMIHYIKF-VGGHRAFPT 19
           S  ++ R+F+ Q   L   LF+ H I+F + GH  F T
Sbjct: 206 SPDQIDRNFSIQLEMLRNKLFVDHVIRFDILGHNPFNT 243


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 357 VDHSAKSASQFRILAPCHYLHLTTLVYHNY 268
           +D + KSA    IL    YLHL+ + YH +
Sbjct: 277 MDETFKSAFMRDILKGLQYLHLSPVAYHGH 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,729,929
Number of Sequences: 27780
Number of extensions: 180799
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)