Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O21
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing...    27   4.2  
At2g33420.1 68415.m04096 expressed protein                             26   9.7  

>At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing
           protein contains similarity to Swiss-Prot:P51659
           estradiol 17 beta-dehydrogenase 4 (17-beta-HSD 4)
           (17-beta-hydroxysteroid dehydrogenase 4) [Homo sapiens];
           contains Pfam profile PF01575: MaoC like domain
          Length = 309

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   ARGLQICRERAMSTDELNIVYHKERTR*LNMLKIKTSMY 117
           A G+  C + A+ +DEL  VYH+     + +L    S++
Sbjct: 34  ALGIGACGQDAVDSDELKFVYHRNGQDLIQVLPTFASLF 72


>At2g33420.1 68415.m04096 expressed protein
          Length = 1039

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 384 LVEEKAKVLVDHSAKSASQFRILAPCHYLHLTTLVYHNYTI*RKTPPKL 238
           LV ++   L++   K+ S   I  P H L  T +++H Y +  +  P L
Sbjct: 340 LVLDEIDELLELMKKTWSTLGITRPIHNLCFTWVLFHQYVVTSQMEPDL 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,030,217
Number of Sequences: 28952
Number of extensions: 161840
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)