Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O20
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   153   1e-38
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    34   0.015
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.2  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   7.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.5  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   9.5  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  153 bits (372), Expect = 1e-38
 Identities = 73/124 (58%), Positives = 93/124 (75%)
 Frame = +2

Query: 11  MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPL 190
           M+R+A++  +   P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL
Sbjct: 58  MIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPL 117

Query: 191 SVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM*T 370
            V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNM  
Sbjct: 118 DVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLN 177

Query: 371 SLPF 382
             PF
Sbjct: 178 ISPF 181



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = +1

Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
           +NISPF+YG+ V  +YD G +F+P ILD+  EDL    L+  + + A+SL   YPT+ S
Sbjct: 176 LNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILS 234


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
 Frame = +2

Query: 29  KDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIP 205
           ++H E    L KLL    G VG +FT     +V     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 206 A----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASE 346
           A       G  P +             + L +PT +  G + ++ D  +   G ++ + +
Sbjct: 139 AGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQ 198

Query: 347 ATLLNM--*TSLPFRMVLL 397
             LL +   T+  F++ LL
Sbjct: 199 TRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 297 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 172
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 231 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 103
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 64  FFESWICFKMVLDGFPHHGLV 2
           FF+S++CF +V+  F  H L+
Sbjct: 515 FFQSYLCFPVVVIVFIAHALI 535


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 244 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 77
           ++ +L  K  +    D+R       + R LD  LQ    +I +IST  +  N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 334 GSF*SYSSQHVNISPFSYGLVVKQVYDSGTIFAPAILDIKPED 462
           GS    S +   +SPFS  + +  +YD  T   P+ L+I  ++
Sbjct: 26  GSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQE 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,828
Number of Sequences: 5004
Number of extensions: 48391
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)