Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O20
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 134 6e-32
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 133 7e-32
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 133 7e-32
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 0.59
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.59
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 2.4
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 2.4
02_03_0041 + 14275897-14276370 29 3.1
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 3.1
04_04_0095 - 22775340-22776017 28 4.1
10_01_0081 - 1033837-1034090,1034500-1034686,1034713-1034941,103... 28 5.5
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686... 28 5.5
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 5.5
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 28 5.5
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 27 7.2
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66... 27 7.2
03_04_0243 + 19298293-19299117 27 7.2
02_04_0455 - 23082570-23082623,23082706-23083005,23083366-230838... 27 7.2
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 27 9.6
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 27 9.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 134 bits (323), Expect = 6e-32
Identities = 63/118 (53%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALL 178
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/59 (55%), Positives = 48/59 (81%)
Frame = +1
Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
+ I PFSYGLV+ VYDSG++F+P +LD+ +DL EKF +GV+ VA++SL+I YPT+A+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAA 239
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 133 bits (322), Expect = 7e-32
Identities = 63/118 (53%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALL 178
Score = 80.6 bits (190), Expect = 7e-16
Identities = 34/59 (57%), Positives = 48/59 (81%)
Frame = +1
Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
+ I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAA 239
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 133 bits (322), Expect = 7e-32
Identities = 63/118 (53%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Frame = +2
Query: 11 MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
++R+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +A
Sbjct: 61 LIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALL 178
Score = 80.6 bits (190), Expect = 7e-16
Identities = 34/59 (57%), Positives = 48/59 (81%)
Frame = +1
Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
+ I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA++SL+I YPT+A+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAA 239
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 31.1 bits (67), Expect = 0.59
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2
Query: 53 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV----VIPAH 211
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 212 N--TGLGPEKTSFFQALSI 262
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.59
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +2
Query: 50 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 208
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 516 GQRERGHVGHSSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 379
G+ + + + K LL K++RLDV+N R+ L+ N +I K
Sbjct: 398 GKGDPFNFSQNKKSLLGKIMRLDVDNPPRQSEIANQSLWGNYSIPK 443
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 184 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 77
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_03_0041 + 14275897-14276370
Length = 157
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 527 GYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 414
G P+ E AT A RR+SG + +AG +PE
Sbjct: 93 GVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 382 SYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 507
SYG V V DSGT A LD + +FL VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 405 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 491
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>10_01_0081 -
1033837-1034090,1034500-1034686,1034713-1034941,
1035328-1035638
Length = 326
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -3
Query: 268 SGDGKSLEERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKAN 89
S GK L + R +A+ M+ D + + RT RGL + ++ I + G+D+
Sbjct: 219 SEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLSSIQAFTAGDDQQP 278
Query: 88 ISLDV 74
+ V
Sbjct: 279 CQMSV 283
>04_04_0289 +
24167246-24167411,24167584-24167708,24167744-24168694,
24168788-24168940,24169251-24169475,24170102-24170587
Length = 701
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 483 SKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRKGRDVHMLRRVASE 340
S E + RLD+ R++ G++H D+ R R + M V SE
Sbjct: 203 SHESRHDIRRLDLSFFSRDESVGIIHAIDDAMARGRRILKMCFDVVSE 250
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 447 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 536
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 KLLFSTCEHLSLFVWSCCQTGVR-LRYHLRAGNSRHQAGGPSREVPCWSGQRG 500
K+L H +L W GV +R ++A AGG + + CWS +G
Sbjct: 92 KVLLQNDTHYTLSAWLQVSDGVADVRVVVKAAGDFIHAGGVAAKSGCWSMLKG 144
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 525 VPDGQRERGHVGHSSKELLAKVLR--LDVENCRRE 427
+PDG + GHSS E+LAK ++ L+ E R++
Sbjct: 85 LPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKD 119
>11_01_0088 -
662984-663024,663743-663774,664079-664503,665048-666006,
666661-666846,666942-667044,667141-667323,667514-667606,
668092-668274,669011-669031
Length = 741
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 525 VPDGQRERGHVGHSSKELLAKVLR--LDVENCRRE 427
+PDG + GHSS E+LAK ++ L+ E R++
Sbjct: 20 LPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKD 54
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 201 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFP 82
+ TD+ + APG A A + S SRTS +P + PT P
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSP 209
>02_04_0455 -
23082570-23082623,23082706-23083005,23083366-23083859,
23083953-23084139,23084359-23084394,23084550-23084688,
23085589-23085596
Length = 405
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 408 HLFDNKTIRKGRDVHMLRRVASEAPTLSPGFRIWTSLIISIVPFEILVGM 259
H+ DN ++KGR + M + VA + P L G + S + + E +G+
Sbjct: 43 HVIDNSDLQKGRLLLMRKEVAIQWPGLPAGVKFDPSDLELLEHLEQKIGL 92
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 394 QDHTKRERCSHVEKSSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLEERSLLRTKAS 215
+D R V+ S +S +QD + +NF+ T +G S ERS ++
Sbjct: 234 EDVLDNNRIRSVDSSRLPTSGKACNIQDATVNENFSKT---SAGSSSSRVERS-TTSEPE 289
Query: 214 VMSGNDDRQWSNGSRTSRGLDFV 146
+ N ++ ++SRGL V
Sbjct: 290 LNHSNKQASGTDNLKSSRGLPSV 312
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 491 PTWPRSRCPSGTRRSR 538
PT PRSR PS +RR R
Sbjct: 149 PTTPRSRAPSSSRRRR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,116
Number of Sequences: 37544
Number of extensions: 356222
Number of successful extensions: 1138
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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