Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O20
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        171   4e-43
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   4.2  
SB_9039| Best HMM Match : M (HMM E-Value=0.00046)                      28   4.2  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  27   7.4  
SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)                   27   7.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  171 bits (415), Expect = 4e-43
 Identities = 78/110 (70%), Positives = 94/110 (85%)
 Frame = +2

Query: 11  MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPL 190
           M+RKAI+ HLE NP LEKLLPHIKGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+
Sbjct: 42  MIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPI 101

Query: 191 SVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 340
            V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 102 DVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 143  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 316
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 317  KPGDK 331
             PG K
Sbjct: 2129 TPGKK 2133


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 531  RRVPDGQRERGHVGHSSKELLAKVLRLDVE--NCRRE 427
            R++ D +RE+  V H++ EL  KV + + E  N RR+
Sbjct: 1120 RQLKDEEREKDAVSHTANELRGKVKKSEAEKTNLRRQ 1156


>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
          Length = 716

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -3

Query: 487 LQQGTSREGPPA*CRELPARRWYRSRTPV*QQDHTKRERCSHVEKSSFRSSHLITRLQDM 308
           L + T+ E       E   R+  RSR  + Q +  K+E    V+K S     L   + DM
Sbjct: 567 LSENTAEEATAGSNLEEIQRKINRSREEMQQIERRKKELQEEVDKLSGLRDRLSHDIADM 626

Query: 307 -DIIDNFNSTL*NLSGDGKSLEER-SLLRTKASVMSGNDD 194
               D    +      +  +L+E+  LLR K   M+ N+D
Sbjct: 627 RSRYDQMQRSYRQQEQEFNALQEKQELLRRKLDQMNANED 666


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 336  PTLSPGFRIWTSLIISIVPFEILVGMERAWKKEVFSGPR 220
            P   P FR   +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -1

Query: 513 QRERGHVGHSSKELLAKVLRLDVENCRREDGTGVVHLFDNKTI---RKGRDVHMLRRVAS 343
           Q + G +G S KE +AK  +  +    ++   G+     NK +   +KG+ +H +RRV  
Sbjct: 278 QPKLGDIGKSKKEHIAKDDKQQIYRNIQKLYRGMSSKTHNKNLDGTKKGKHIHEIRRVRR 337

Query: 342 E 340
           E
Sbjct: 338 E 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,106
Number of Sequences: 59808
Number of extensions: 397031
Number of successful extensions: 1154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)