Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O20
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   179   1e-45
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    27   8.6  
U58742-3|AAB36855.1|  262|Caenorhabditis elegans Helix loop heli...    27   8.6  
U58742-2|AAB36858.1|  239|Caenorhabditis elegans Helix loop heli...    27   8.6  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  179 bits (435), Expect = 1e-45
 Identities = 84/124 (67%), Positives = 101/124 (81%)
 Frame = +2

Query: 11  MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPL 190
           M+RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL ++R KLLEN+  APA+ GAIAP 
Sbjct: 60  MIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPC 119

Query: 191 SVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM*T 370
            V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNM  
Sbjct: 120 DVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLG 179

Query: 371 SLPF 382
             PF
Sbjct: 180 VTPF 183



 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 34/59 (57%), Positives = 51/59 (86%)
 Frame = +1

Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
           + ++PFSYGLVV+QVYD GT++ P +LD+  E+LR++FL+GV NVA++SL++ YPT+AS
Sbjct: 178 LGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLAS 236


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 56  LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 232
           L K    +KG  G +FT     +V  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 233 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
                + L +PTK+ KG I +     + K G+ +   +A +L
Sbjct: 150 MEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKIL 191


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 339 LLKLLFSTCEHLSLFVWSCCQTGVRLRYHLR-AGNSRHQAGGPSREVPCWS 488
           LL L F+T  HL    +    TG+ +   LR A N    +  P+R+ PCWS
Sbjct: 424 LLDLSFNTISHLDPHFF----TGLPMLQQLRIASNPTLFSRCPNRDSPCWS 470


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 137 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 286
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 198 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPT 88
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 515 DNESAATLATPARNFSRRSSGLMSRIAGAKMVPES 411
           D    + L  PA +  R+ S +MSR AG+K  P S
Sbjct: 72  DASKRSGLKAPAASAIRKDSSVMSRSAGSKASPGS 106


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 307 DIIDNFNSTL*NLSGDGKSLEERSLLRTKA-SVMSGNDDRQWSN 179
           D +  F+ ++ +L G+G  L ERSL  TKA  +M      +W N
Sbjct: 457 DTVSLFSPSILSLHGEGTDL-ERSLSLTKALRLMEDTGQEEWMN 499


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 346 FRSSHLITRLQDM-DIIDNFNSTL*NLSGDGKSLEERSLLRTKA 218
           F +  ++TRL ++ DII   N+TL  ++G  + L +R   R +A
Sbjct: 436 FPAHSIMTRLSNVKDIIKELNTTLNFMTGSNEQLRDRFHNRNRA 479


>U58742-3|AAB36855.1|  262|Caenorhabditis elegans Helix loop helix
           protein 28 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 397 QQDHTKRERCSHVEKSSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLEERSLLRTK 221
           Q      E+ SH E   FR   +  R+  +D+   FNST+     +G + EE+  ++TK
Sbjct: 70  QNPSDSNEKISH-ETILFR---VFERVSGVDLETKFNSTVDIPKAEGNTKEEKQKVKTK 124


>U58742-2|AAB36858.1|  239|Caenorhabditis elegans Helix loop helix
           protein 29 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 397 QQDHTKRERCSHVEKSSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLEERSLLRTK 221
           Q      E+ SH E   FR   +  R+  +D+   FNST+     +G + EE+  ++TK
Sbjct: 47  QNPSDSNEKISH-ETILFR---VFERVSGVDLETKFNSTVDIPKAEGNTKEEKQKVKTK 101


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 342 EAPTLSPGFRIWTSLIISIVPFEILVG 262
           EAP L P   +W  +I+SI P    VG
Sbjct: 56  EAPGLKPMGTVWKEVIVSITPGMAAVG 82


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 248 GRKKSSQDQGQCYERE*RQTMEQWLQDE 165
           GRKK   ++ QC +RE R   EQ   DE
Sbjct: 424 GRKKREAERDQCLKREKRYADEQCDNDE 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,331
Number of Sequences: 27780
Number of extensions: 282004
Number of successful extensions: 852
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)