Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O20
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   135   2e-32
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   135   2e-32
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      133   6e-32
At3g50610.1 68416.m05534 hypothetical protein                          31   0.37 
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    31   0.49 
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    29   1.5  
At1g73930.1 68414.m08562 expressed protein                             29   2.0  
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein...    28   3.5  
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ...    28   4.6  
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put...    28   4.6  
At1g56160.1 68414.m06452 myb family transcription factor (MYB72)...    27   6.1  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    27   8.0  
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    27   8.0  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    27   8.0  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/118 (54%), Positives = 89/118 (75%), Gaps = 2/118 (1%)
 Frame = +2

Query: 11  MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
           MM+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 60  MMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 119

Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
           P+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 29/59 (49%), Positives = 47/59 (79%)
 Frame = +1

Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
           + I PFSYGLVV+ VYD+G++F+P +LD+  + L EKF +G++ V +L+L++ YPT+A+
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAA 238


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/118 (54%), Positives = 89/118 (75%), Gaps = 2/118 (1%)
 Frame = +2

Query: 11  MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
           MM+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 60  MMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 119

Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
           P+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 29/59 (49%), Positives = 47/59 (79%)
 Frame = +1

Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
           + I PFSYGLVV+ VYD+G++F+P +LD+  + L EKF +G++ V +L+L++ YPT+A+
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAA 238


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  133 bits (322), Expect = 6e-32
 Identities = 63/118 (53%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
 Frame = +2

Query: 11  MMRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 184
           MM+++++ H +   N A   LLP ++GNVG +FT+GDL +V +++ + KV APAR G +A
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 185 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 358
           P+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL 178



 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 34/59 (57%), Positives = 47/59 (79%)
 Frame = +1

Query: 364 VNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVAS 540
           + I PFSYGLVV+ VYD+G++F P +L++  +DL EKF AGV+ + ALSL+I YPTVA+
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAA 239


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 32  DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 208
           D + T+P     + H KGNV     + D       KLL+  VQ   + G+    +   P 
Sbjct: 31  DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90

Query: 209 HNTGLGPEK 235
           H+ G+G +K
Sbjct: 91  HSPGVGHKK 99


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +2

Query: 41  ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 220
           E    + K+   ++G+ G + T     +V       +    +R G+IA  +V +      
Sbjct: 85  ELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLE 144

Query: 221 -LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 364
               E     + L +P +++KGT+E++ D  + + G ++    A +L +
Sbjct: 145 QFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRL 193


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -1

Query: 540 RRDRRVPDGQRERGHVGHSSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRKGRDVHM 361
           RR+ RV D  R++      S+E         V+N  +ED  G   L  N  + K  D H 
Sbjct: 388 RREERVKDSSRKKEDATSGSREER-------VDNSTKEDPVGAAQLLGNDFVEKVSDYHT 440

Query: 360 LRR 352
             R
Sbjct: 441 SER 443


>At1g73930.1 68414.m08562 expressed protein 
          Length = 623

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/60 (25%), Positives = 36/60 (60%)
 Frame = -3

Query: 424 WYRSRTPV*QQDHTKRERCSHVEKSSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLE 245
           W++ R  V +Q+  +  R + + K+  R   + +++ +++ +D+FN+   ++S + KSLE
Sbjct: 517 WFQRRRAVAEQEQRRLWRLARM-KTDMRQ--ITSQMNELEAVDSFNAIEKHISEEVKSLE 573


>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 474

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = -3

Query: 427 RWYRSRTPV*QQDHTKRERCSHVEKSSFRSSHLITRLQDMDIIDNFNST 281
           RWY  R P+   +  K   C+     S   +H++ + Q    +    +T
Sbjct: 163 RWYERRAPIRTWERLKWNMCAKYSPQSLSPAHVVQQKQKPTFLPQMQAT 211


>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 435

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 214 HWPWS*EDFFLPGSFHPH 267
           +WPW  +    P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230


>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 11  MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 142
           ++ + I + L  N + EK  PHI   VG + T+GD+ ++ D  L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805


>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB72) mRNA, partial cds GI:3941501
          Length = 296

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   GHDEESHQGPS*NKSSSRKTASSHQGKC 90
           G  EE H G   N+S +  T+S HQG+C
Sbjct: 145 GAQEEIHSGL--NESQNSATSSHHQGEC 170


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 69  FLTSRE-MLALSSPVEILLMCVINCWRTKSKP 161
           FLTS+E  L++SS    +++ V+N WR    P
Sbjct: 897 FLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNP 928


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -1

Query: 444 ENCRREDGTGVVHLFDNKTIRKGRDVHMLRRVASEAPTLSPGFRIWTSLIISIVPFEILV 265
           E  R+     V+HLF NK +R  RDV        E   +    RI +SL I++   EILV
Sbjct: 123 EYWRQMKSVCVLHLFSNKMVRSFRDVRQ-----EEISLMIEKIRISSSLRINL--SEILV 175

Query: 264 GM 259
            +
Sbjct: 176 NL 177


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  PHIKGNVGFVFTRGDLVDVRDKLL 142
           PHI   VGF+ T+GD+  + D  L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,979
Number of Sequences: 28952
Number of extensions: 273490
Number of successful extensions: 915
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)