Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O19
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   257   1e-69
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   257   1e-69
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   257   1e-69
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   138   4e-34
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.48 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   4.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.0  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   7.9  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   7.9  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  257 bits (629), Expect = 1e-69
 Identities = 124/136 (91%), Positives = 130/136 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KA RK+AP TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDIQLARRIRGERA 523
            PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  257 bits (629), Expect = 1e-69
 Identities = 124/136 (91%), Positives = 130/136 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KA RK+AP TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDIQLARRIRGERA 523
            PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  257 bits (629), Expect = 1e-69
 Identities = 124/136 (91%), Positives = 130/136 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KA RK+AP TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDIQLARRIRGERA 523
            PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  138 bits (335), Expect = 4e-34
 Identities = 70/99 (70%), Positives = 84/99 (84%), Gaps = 6/99 (6%)
 Frame = +2

Query: 236 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQ 397
           RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQ
Sbjct: 21  RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQ 80

Query: 398 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 514
           EA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 81  EAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 221 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 382
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    +F   +   
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566

Query: 383 IGALQEASEAYLVGLFE 433
           + A  E  EAY+  L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 438 PTFAPSTPNA*PLCLKTSSSPGE 506
           P  AP+TP++ P+   +S+SP E
Sbjct: 199 PRSAPNTPSSHPMSAASSASPAE 221


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 257 ALREIRRYQKSTELLIRKLPFQR 325
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 363 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 455
           F S+  PL    + +  I WVC+ T  FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = -1

Query: 505 SPGELDVFRHNGYAFGVDGAKVGVFKQTHQIGFTGLLQSANGSRLETKIGFKVLSNFSNE 326
           SPG  D F         +  K+   +    IGF   L       LE ++ + +L   S  
Sbjct: 166 SPGNHDEFTIRNLRLSFEPDKINNVEMAASIGFLAHLLQTLSKYLEKELAYPILCASSRS 225

Query: 325 SL 320
           S+
Sbjct: 226 SI 227


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 477 IMVTRLAWMAQRLVSSNRPTR 415
           I  T   W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,492
Number of Sequences: 5004
Number of extensions: 45858
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)