Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O19
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 128 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHML 12
           +++   T + F   L +     +G  NKF+NN + D ++
Sbjct: 279 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALI 317



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -2

Query: 462 LAWMAQRLVSSNRPTR*ASLASCKAPMAADWKRRSVLKS*AISR--TSRWK 316
           L W     V  + P    S A  K P+   W+RR++  S  I    + RW+
Sbjct: 158 LCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 208


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 128 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHML 12
           +++   T + F   L +     +G  NKF+NN + D ++
Sbjct: 332 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALI 370


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 474 LCLKTSSSPGESAESVL 524
           LC+  +S  GES E+VL
Sbjct: 286 LCIVNNSVGGESVETVL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,339
Number of Sequences: 438
Number of extensions: 2959
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)