Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O19
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 265 1e-71
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 265 1e-71
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 265 1e-71
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 264 2e-71
At5g10400.1 68418.m01206 histone H3 identical to several histone... 264 2e-71
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 264 2e-71
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 264 2e-71
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 264 2e-71
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 256 1e-68
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 254 4e-68
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 251 2e-67
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 237 4e-63
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 193 6e-50
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 111 2e-25
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 33 0.18
At5g66410.1 68418.m08376 expressed protein 30 1.3
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 2.9
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 27 6.7
At1g11400.2 68414.m01310 expressed protein 27 8.9
At1g11400.1 68414.m01309 expressed protein 27 8.9
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 1e-71
Identities = 130/136 (95%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 1e-71
Identities = 130/136 (95%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 1e-71
Identities = 130/136 (95%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 264 bits (648), Expect = 2e-71
Identities = 128/136 (94%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 264 bits (648), Expect = 2e-71
Identities = 128/136 (94%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 264 bits (648), Expect = 2e-71
Identities = 128/136 (94%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 264 bits (648), Expect = 2e-71
Identities = 128/136 (94%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 264 bits (648), Expect = 2e-71
Identities = 128/136 (94%), Positives = 133/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLATKA RKSAP TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 256 bits (626), Expect = 1e-68
Identities = 125/136 (91%), Positives = 130/136 (95%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKS GGKAPR LATKA RKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQD+KTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKD+QLARRIRGERA
Sbjct: 121 MPKDVQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 254 bits (621), Expect = 4e-68
Identities = 122/136 (89%), Positives = 131/136 (96%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTAR STGGKAPRKQLA KA R+SAP TGGVKKPHR+RPGTVALR+IR+YQKSTE
Sbjct: 1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
+LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 ILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPK+IQLARRIRGERA
Sbjct: 121 MPKEIQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 251 bits (615), Expect = 2e-67
Identities = 123/136 (90%), Positives = 129/136 (94%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQ+ARKS GGKAP KQLATKA RKSAPTTGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LL RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
MPKD+QLARRIR ERA
Sbjct: 121 MPKDVQLARRIRAERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 237 bits (580), Expect = 4e-63
Identities = 118/137 (86%), Positives = 126/137 (91%), Gaps = 1/137 (0%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSA-PTTGGVKKPHRYRPGTVALREIRRYQKST 292
MARTKQTARKSTGGK PRK+LATKA RK+ P GGVK+ HR+RPGTVALREIR+YQKST
Sbjct: 1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60
Query: 293 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 472
+LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVT
Sbjct: 61 DLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 120
Query: 473 IMPKDIQLARRIRGERA 523
IM KDIQLARRIRGERA
Sbjct: 121 IMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 193 bits (471), Expect = 6e-50
Identities = 93/135 (68%), Positives = 115/135 (85%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MAR+ QTARK+TGGKAP A + + S P +KKP+RY+PGTVALREIR+YQK+T+
Sbjct: 1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
L+IRKLPFQRLV+EIAQ K DLRFQ+ A+ ALQEA+EA++VG+FEDTNLCA+HAKR TI
Sbjct: 56 LVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTI 115
Query: 476 MPKDIQLARRIRGER 520
MPKDIQLA+R+RG+R
Sbjct: 116 MPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 111 bits (268), Expect = 2e-25
Identities = 65/133 (48%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Frame = +2
Query: 125 TKQTARKSTGGKAPRKQLATKAVRKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLI 304
T+QT ++ R+ K R++ P G KK +RYRPGTVAL+EIR +QK T LLI
Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLI 101
Query: 305 RKLPFQRLVREIAQDFKTDL--RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 478
F R VR I R+ + A+ ALQEA+E YLVGLF D+ LCAIHA+RVT+M
Sbjct: 102 PAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLM 161
Query: 479 PKDIQLARRIRGE 517
KD +LARR+ G+
Sbjct: 162 RKDFELARRLGGK 174
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = -1
Query: 364 KIGFKVLSNFSNESLERQLADQQLRRFLIATNFSKRYSTRAITMGFLNSTSSGCRFSHRF 185
++G + + ++ +L L D+Q++ TNF+ G S SGCR F
Sbjct: 599 RLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCIHRWASGMDQSMCSGCR--QPF 656
Query: 184 SSQLFARSFTSCRFTGCLLCTCHYSLQ 104
S + + +C C CT SL+
Sbjct: 657 SFKRKRHNCYNCGLVFCHSCTSKKSLK 683
>At5g66410.1 68418.m08376 expressed protein
Length = 230
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +2
Query: 302 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 481
+ L F ++ A+D+K ++ A G+ E L L +D L +HA R+ +
Sbjct: 10 LSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALR 69
Query: 482 KDIQ 493
++++
Sbjct: 70 REVE 73
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 201 DFRTALVA-NCLRGALPPVDLR-AVCFVRAIIHFSELLKSINYIKLY*NW 58
DFR ++A R L P ++C +++ F + + I Y+KLY NW
Sbjct: 330 DFRFGVIAAKGYRHTLKPTAQGLSLCLDYSVLAFRKAMSVIEYLKLYFNW 379
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = -1
Query: 364 KIGFKVLSNFSNESLERQLADQQLRRFLIATNFSKRYSTRAITMGFLNSTSSGCRFSHRF 185
++G + ++ +L L D+Q++ +NF+ G S SGCR F
Sbjct: 635 RLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVCLHKWASGMDQSMCSGCRQPFNF 694
Query: 184 SSQLFARSFTSCRFTGCLLCTCHYSLQ 104
+ + +C C C+ SL+
Sbjct: 695 KRK--RHNCYNCGLVFCHSCSNKKSLK 719
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 215 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ 322
G ++KP R RPG E+ +YQ L+ +++ Q
Sbjct: 34 GTLRKPIRIRPGYTPEDEVVKYQSKGSLMKKEMASQ 69
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 215 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ 322
G ++KP R RPG E+ +YQ L+ +++ Q
Sbjct: 34 GTLRKPIRIRPGYTPEDEVVKYQSKGSLMKKEMASQ 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,667
Number of Sequences: 28952
Number of extensions: 242768
Number of successful extensions: 675
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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