Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O18
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    28   0.78 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.0  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    27   1.4  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    27   1.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   5.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.5  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   7.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.3  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   7.3  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    25   9.6  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   9.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.6  

>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 493 ESKFDPKVPPKSTPWLSAKFTPKSPP-KFVPMFV 395
           E  F PK     T   S+  TP+SPP K +P FV
Sbjct: 192 EKIFSPKALSSPTQGASSNVTPESPPEKPIPSFV 225


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 51   PPXPLNKPKTIYGPPKVYGPPKSYGPP 131
            PP P++ P     PP   GPP +  PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 54   PXPLNKPKTIYGPPKVYGPPKSYGPPKLGPPKL 152
            P P   P ++  PP    PP   GPP   PP L
Sbjct: 1705 PTPPPPPMSVPPPPSA--PPMPAGPPSAPPPPL 1735


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 69  KPKTIYGPPKVYGPPKSYGPPKLGPPKL 152
           KP+ +   P  Y P ++Y PP L P KL
Sbjct: 190 KPENLLFQPIEYLPSQNYTPPSLEPNKL 217


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = +3

Query: 363 PIQLPTVTTVETN-IGTNFGGDFGVNFADSHGVDFGGTFGSNFD------SGANLPAPIY 521
           P ++P+   V+TN  G  F G F    +   G+D+  T G          SG  LP P  
Sbjct: 276 PNRVPSEEIVDTNGAGDAFAGGFIAALSQGQGIDYAVTLGHWLGQECIKVSGTTLPLPKK 335

Query: 522 GTPL 533
             PL
Sbjct: 336 QFPL 339


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 15   GTRVFPNQNYERPPXPLN 68
            G ++   QN+ERPP P N
Sbjct: 1176 GNKILLWQNHERPPRPFN 1193


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 214 HLKYQNS*RNHSHRNHTMDLLNQSTDL 294
           H     S  +HSH NH+M L N + D+
Sbjct: 475 HNHDHGSHHHHSHSNHSMCLPNTTNDI 501


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 529 GVPYIGAGKLAPESKFDPKVPPKSTPWLSAKFT 431
           G PY    K  PE   +P  PP   P+LSA F+
Sbjct: 505 GNPY-NYEKNEPEQLEEPDRPPAFNPFLSATFS 536


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15  GTRVFPNQNYE--RPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGP 143
           G +V P    +  RPP P   P  IY  P V   P     P L P
Sbjct: 342 GNQVMPTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNPFLQP 386


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 118 LTXHLNSGHRNSLMDLLKRRMALPSPSRRT-VHHL 219
           +T HLN      L+DLL   +     + RT VHH+
Sbjct: 400 VTNHLNQNSFGDLLDLLYASLPCTDRAGRTVVHHI 434


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 72  PKTIYGPPKVYGPPKSYGPPKLGPPK 149
           P+  YG P  Y P ++Y      PP+
Sbjct: 17  PQQAYGGPNYYPPQQNYPQQGYAPPQ 42


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 481 DPKVPPKSTPWLSAKFTPKSP 419
           +PK PPK+ P  + + TP  P
Sbjct: 170 NPKEPPKTYPVCTIRSTPSQP 190


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/75 (21%), Positives = 30/75 (40%)
 Frame = +1

Query: 76  KQSTDHQKSMALQNLTXHLNSGHRNSLMDLLKRRMALPSPSRRTVHHLKYQNS*RNHSHR 255
           K   +  KS  + N T   ++    S   +   +    S  RR++  L    S   H H 
Sbjct: 425 KSLRNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLIRIGSLHRHHHH 484

Query: 256 NHTMDLLNQSTDLQS 300
           +H  DL+   + +++
Sbjct: 485 HHKTDLIESDSGIEA 499


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/58 (22%), Positives = 22/58 (37%)
 Frame = +3

Query: 348 PLELPPIQLPTVTTVETNIGTNFGGDFGVNFADSHGVDFGGTFGSNFDSGANLPAPIY 521
           P   P +  P+    + +   +    + V+          G  GSNFDS +    P+Y
Sbjct: 104 PSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGPIGSNFDSASEHNGPVY 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,769
Number of Sequences: 5004
Number of extensions: 48946
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)