Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O18
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11561| Best HMM Match : HAT (HMM E-Value=1.1) 37 0.009
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 32 0.35
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 0.81
SB_710| Best HMM Match : rve (HMM E-Value=0.003) 31 0.81
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 1.9
SB_39476| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_32848| Best HMM Match : S-antigen (HMM E-Value=8.5e-05) 28 4.3
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 28 4.3
SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_56179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_50021| Best HMM Match : rve (HMM E-Value=0.043) 28 4.3
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 28 4.3
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 28 5.7
SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 27 7.6
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 27 7.6
>SB_11561| Best HMM Match : HAT (HMM E-Value=1.1)
Length = 409
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVPMFVSTVVTVGS 371
K PKV PK TP ++ K TPK PK P V V S
Sbjct: 81 KVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTAVSS 119
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 502 LAPE-SKFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
+ PE SK PKV PK TP ++ K TPK PK P
Sbjct: 39 VGPEPSKVTPKVTPKVTPKVTPKVTPKVTPKVTP 72
Score = 34.3 bits (75), Expect = 0.066
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 544 GRERSGVPYIGAGKLAPE--SKFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
G E S V K+ P+ K PKV PK TP ++ K TPK PK P
Sbjct: 40 GPEPSKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTPKVTP 88
Score = 33.9 bits (74), Expect = 0.087
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
K PKV PK TP ++ K TPK PK P
Sbjct: 65 KVTPKVTPKVTPKVTPKVTPKVTPKVTP 92
Score = 33.9 bits (74), Expect = 0.087
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
K PKV PK TP ++ K TPK PK P
Sbjct: 69 KVTPKVTPKVTPKVTPKVTPKVTPKVTP 96
Score = 33.9 bits (74), Expect = 0.087
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
K PKV PK TP ++ K TPK PK P
Sbjct: 73 KVTPKVTPKVTPKVTPKVTPKVTPKVTP 100
Score = 33.9 bits (74), Expect = 0.087
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
K PKV PK TP ++ K TPK PK P
Sbjct: 77 KVTPKVTPKVTPKVTPKVTPKVTPKVTP 104
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVPMFVSTVVTVGS 371
K PKV PK TP ++ K TPK PK + + + TV S
Sbjct: 89 KVTPKVTPKVTPKVTPKVTPKVTPKVTAVSSAGLCTVRS 127
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = +3
Query: 30 PNQNYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
P N PP P NKP PP GPP PP GPP
Sbjct: 360 PTNNTPPPPPPTNKPPP--PPPPTNGPPPP-PPPTNGPP 395
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 24 VFPNQNYERP--PXPLNKPKTIYGPPKVYGPPKSYGPPKLGP 143
VFP + + P P L + YGPP+ +G P YG P P
Sbjct: 123 VFPPRGHPMPYTPHKLQQQFGFYGPPQGFGYPGPYGMPHAFP 164
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 30 PNQNYERPPXPLNKPKTIYGPPKVYGPPKS-YGPPKLGPP 146
PN Y PP P P +Y PP PP + Y PP PP
Sbjct: 144 PNAPYPPPPNP-PYPPPLYPPPPNPPPPNAPYPPPPYPPP 182
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 18 TRVFPNQNYERPPXPLNKPKTIYGPP--KVYGPPKSYG-PPKLGPP 146
T PN Y PP P P Y PP Y PP + PP PP
Sbjct: 86 TNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPP 131
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 27 FPNQNYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
+P Y PP P P Y PP PP PP PP
Sbjct: 156 YPPPLYPPPPNP-PPPNAPYPPPPYPPPPNPPYPPPPNPP 194
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPP----KLGPP 146
PP P P+ GPP + GPP GPP +LGPP
Sbjct: 114 PPGPPG-PQMPPGPPGLPGPPGPAGPPGTNGELGPP 148
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
PP P P GPP GPP GP LGPP
Sbjct: 633 PPSPPGPP----GPPGPKGPPGPNGP--LGPP 658
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
PP P P GPP GPP GP LGPP
Sbjct: 718 PPSPPGPP----GPPGPNGPPGPNGP--LGPP 743
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
PP P P GPP GPP GP LGPP
Sbjct: 803 PPSPPGPP----GPPGPKGPPGPNGP--LGPP 828
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPPK 149
PP P P GPP GPP GP PK
Sbjct: 31 PPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPK 63
>SB_710| Best HMM Match : rve (HMM E-Value=0.003)
Length = 538
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 154 LMDLLKRRMALPSPSRRTVHHLKYQNS*RNHSHRNHTMDL 273
L D L R + PS S T+ LKY+ + H + HT L
Sbjct: 115 LQDNLPRNIPRPSDSDDTIERLKYRQEVQKHYYDRHTKPL 154
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 60 PLNKPKTIYGPPKVYGPPKSYGPPKLGPPK 149
P +KP + P GPPK G GPPK
Sbjct: 532 PASKPAPVKRPAAKKGPPKPSGGASKGPPK 561
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 54 PXPLNKPKTIYGPPKVYGPPKSYGPPKLGP 143
P P+ +P GPPK G S GPPK P
Sbjct: 536 PAPVKRPAAKKGPPKPSG-GASKGPPKKKP 564
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPP----KSYGPP-KLGPP 146
PP P + K I GPP GPP + GPP GPP
Sbjct: 3796 PPGPPGRSKNISGPPGPQGPPGQASQIPGPPGPQGPP 3832
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +3
Query: 33 NQNYERPPXPLNKP---KTIYGPPKVYGPPKSYGPP 131
++N PP P P I GPP GPP GPP
Sbjct: 3803 SKNISGPPGPQGPPGQASQIPGPPGPQGPPGPPGPP 3838
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 39 NYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
N+ RPP + YGP YGP SYGP + GPP
Sbjct: 350 NHGRPPHD-DFGHEAYGPDD-YGPD-SYGPEEFGPP 382
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 378 TVTTVETNIGTNFGGDFGVNFADSHGVDFGGTFGSNF 488
T+ ++ G FGG G F S G FGG+ G +F
Sbjct: 410 TLPKSDSKPGGAFGGSSGGGFGGSSGGSFGGSSGGSF 446
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 405 GTNFGGDFGVNFADSHGVDFGGT-FGSNFDSG 497
G FGG G +F S G FGG+ FGS G
Sbjct: 427 GGGFGGSSGGSFGGSSGGSFGGSGFGSKSSGG 458
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 51 PPXPLNKPKTIY-GPPKVYGPPKSYGPPKLGPP 146
PP + + Y G P ++GPP GPP +G P
Sbjct: 189 PPAGVGQHSGPYPGQPGMWGPPPMGGPPPMGGP 221
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 27 FPNQNYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
+P Q P P+ P + GPP Y PP PP G P
Sbjct: 200 YPGQPGMWGPPPMGGPPPMGGPPGGYPPPPP--PPGAGDP 237
>SB_39476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 22 GSSQTKITNDPRHL*TNLKQSTDHQKSMALQNLTXHLNSGHR 147
G+S+ IT P L + +S A+QNLT LNSG+R
Sbjct: 77 GASKDTITGPPPQLPND--ESAGSSVGSAIQNLTQFLNSGNR 116
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +3
Query: 87 GPPKVYGPPKSYGPP--KLGPP 146
GPP+ GPP +GPP GPP
Sbjct: 404 GPPRPMGPPGPHGPPFGPRGPP 425
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPP-KVYGPPKSYGPPKLGP 143
PP P+ P +GPP GPP GPP+ GP
Sbjct: 405 PPRPMGPPGP-HGPPFGPRGPPPHGGPPR-GP 434
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +3
Query: 51 PPXPLNKPKTIY-GPPKVYG--PPKSYGPPKLGPPKL 152
PP P P Y GPP G PP P GPP++
Sbjct: 483 PPPPFGPPPPFYRGPPPPRGMPPPPRQRMPSQGPPQV 519
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 51 PPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
PP P P +Y PP+ + PP GPP
Sbjct: 459 PPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPP 490
>SB_32848| Best HMM Match : S-antigen (HMM E-Value=8.5e-05)
Length = 555
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 390 VETNIGTNFGGDFGVNFADSHGVDFGGTFGSNFDSGANL 506
++ + G + GD+G++ +G+D G +G + G L
Sbjct: 284 MQRDYGLDMQGDYGLDMQGDYGLDMQGGYGLDMQGGYGL 322
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 LHEFGTRVFPNQNYERPPXPLNKPKTIYGPPKVYGPPKS-YGPPKLGP 143
LH+ G +F + + P P+ P PP + GP + + PP +GP
Sbjct: 771 LHKKGENIFMQRPF---PPPMMGPMQRPFPPPMMGPMQGPFNPPMMGP 815
>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 31 QTKITNDPRHL*TN---LKQSTDHQKSMALQNLTXHLNSGHRNSLMDL 165
Q ++ ND RH T L+ +DH+ + L+N N HR L L
Sbjct: 13 QNEVFNDKRHQTTQRNKLRTYSDHKDNYELENYLEISNQNHRRCLTKL 60
>SB_56179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 423 DFGVNFADSHGVDFGGTFGSNFDSGANLPAPIYGTP 530
D G F S G+DF GS F + P+P +G P
Sbjct: 152 DRGEGFQRSFGMDFELEDGSKFHYPPSTPSPSHGAP 187
>SB_50021| Best HMM Match : rve (HMM E-Value=0.043)
Length = 662
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 154 LMDLLKRRMALPSPSRRTVHHLKYQNS*RNHSHRNHTMDL 273
L D R + PS S T+ LKY+ + H + HT L
Sbjct: 523 LQDNQPRNIPRPSDSDDTIERLKYRQQVQKHYYDRHTKPL 562
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 487 KFDPKVPPKSTPWLSAKFTPKSPPKFVP 404
K +PK PK++P +S K + K PK P
Sbjct: 78 KTNPKTSPKTSPKISLKTSLKKSPKISP 105
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -2
Query: 496 PESKFDPKVPPKSTPWLSAKFTPKSPPKFVPMFVSTVVTVGSCIGGSS 353
P + + PK PK+TP P PP +P S V G S
Sbjct: 654 PLAPYPPKTSPKTTPKPHIPPAPSRPPPQLPPEASKAVPTRLAAGSGS 701
>SB_27047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 49 DPRHL*TNLKQSTDHQKSMALQ----NLTXHLNSGHRNSLMDLLKRRMALPSPSR 201
DP L T+ K + HQK+ L+ +LT H NSG + LK L S R
Sbjct: 14 DPHSLTTHTKTGSTHQKAKDLKIDPHSLTTHTNSGSSHQKAKDLKIGDPLESTCR 68
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 27.9 bits (59), Expect = 5.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 426 FGVNFADSHGVDFGGTFGSNFDSG 497
+G + +G +G T+GS++D+G
Sbjct: 692 YGSTYGSPYGSQYGSTYGSSYDTG 715
>SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 454 PWLSAKFTPKSPPKFVPMFVSTVVTVGSCIGGSS-KGMFWTFNN 326
P K T P P+ V+T G C+GG + +G+ +F N
Sbjct: 36 PGTKVKVTRSDDPTHTPLLVTT----GDCLGGKTMRGLLMSFGN 75
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 42 YERPPXPLNKPKTI-YGPPKVYG-PPKSYGPPKLGP 143
Y PP P P T+ GP + G PP S PP GP
Sbjct: 381 YSMPPRP-GAPGTMPTGPVPLLGNPPSSQAPPARGP 415
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 472 VPPKSTPWLSAKFTPKSPPKFVPMFVSTVVTVGSCIGGSS 353
+PP +TP TP PP + ++T+ T G G S
Sbjct: 443 IPPPTTPLPQTVPTPPRPPTTMTTILTTIATSGPPGGAPS 482
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = +3
Query: 30 PNQNYERPPXPLNK-----PKTIYGPPKVY-GPPKSYGPPKLGPPK 149
P QN +PP P NK +T P ++ P + PP PPK
Sbjct: 134 PQQNQPKPPKPSNKTVKQAAQTPSKPSSLWDAPTPTSAPPASAPPK 179
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 30 PNQNYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
P+Q + PP P P + PP PP S PP+ PP
Sbjct: 198 PSQITQPPPPPPRPPPSPPPPP----PPPSPSPPRPPPP 232
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,611
Number of Sequences: 59808
Number of extensions: 372340
Number of successful extensions: 1509
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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