Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O18
(545 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ219482-1|ABB29886.1| 545|Anopheles gambiae cryptochrome 1 pro... 25 1.2
DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein. 25 2.2
AJ439060-4|CAD27755.1| 151|Anopheles gambiae putative sRNP prot... 25 2.2
AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubu... 25 2.2
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 25 2.2
AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein p... 24 3.8
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 23 5.0
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 23 5.0
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 23 5.0
AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic acetylch... 23 6.6
AJ439353-4|CAD27926.1| 338|Anopheles gambiae putative hox prote... 23 6.6
>DQ219482-1|ABB29886.1| 545|Anopheles gambiae cryptochrome 1
protein.
Length = 545
Score = 25.4 bits (53), Expect = 1.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 377 WKLYRREL*RYVLDI**RCAVCCLNWLWRSVDWFRRSIVWFRC 249
W+ + +Y+LD +VC NW+W S F R + +C
Sbjct: 394 WEEGLQHFLKYLLDA--DWSVCAGNWMWVSSSAFERLLDSSKC 434
>DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein.
Length = 889
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 54 PXPLNKPKTIYGPPKVYGPPKSYGPPKLGPP 146
P L P P PP PP +GPP
Sbjct: 564 PAQLRFPAGFPNLPNAQPPPAPPPPPPMGPP 594
>AJ439060-4|CAD27755.1| 151|Anopheles gambiae putative sRNP
protein.
Length = 151
Score = 24.6 bits (51), Expect = 2.2
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +3
Query: 30 PNQNYERPPXPLNKPKTIYGPPKVYGPPKSYGPPKLG--PPKL 152
P PP P P PP + GP PP +G PP +
Sbjct: 79 PPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPM 121
>AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubule
binding protein protein.
Length = 838
Score = 24.6 bits (51), Expect = 2.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 93 PKVYGPPKSYGPPKLGPP 146
P++ PP + GPP+ G P
Sbjct: 189 PQMMRPPGNVGPPRTGTP 206
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 338 PKHTFRAPSYTTSNGDDR*NKHWYKLWRRF 427
P+ R P Y ++ DR H+Y + RRF
Sbjct: 279 PRRQGRRPVYWWTSEIDRLRSHFYGMQRRF 308
>AB090812-1|BAC57899.1| 541|Anopheles gambiae gag-like protein
protein.
Length = 541
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 90 PPKVYGPPKSYGPPKLGPP 146
PP V PP S+ PP L P
Sbjct: 5 PPGVNRPPGSHRPPGLSNP 23
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 23.4 bits (48), Expect = 5.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 498 LPSQSLIQKFLQNQPHGYQRNLHQN 424
LP + LIQ N H YQR H N
Sbjct: 2077 LPKRVLIQP---NSRHAYQRTYHYN 2098
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 23.4 bits (48), Expect = 5.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 498 LPSQSLIQKFLQNQPHGYQRNLHQN 424
LP + LIQ N H YQR H N
Sbjct: 2078 LPKRVLIQP---NSRHAYQRTYHYN 2099
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 23.4 bits (48), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 190 SPSRR-TVHHLKYQNS*RNHSHRNHTMDLLNQSTD--LQSQLRQ 312
+PS R V +Y S T++LLN+STD L +Q RQ
Sbjct: 576 TPSHRFQVSKSRYTGEKSTRSDALRTLNLLNRSTDHALLAQKRQ 619
>AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 2 protein.
Length = 569
Score = 23.0 bits (47), Expect = 6.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 442 LIAMGLILEELLDQTLTRELIYQLQYMEHHF 534
L+ +GL L +L+D L +++ ++EH +
Sbjct: 62 LVKLGLRLSQLIDLNLKDQILTTNIWLEHEW 92
>AJ439353-4|CAD27926.1| 338|Anopheles gambiae putative hox protein
protein.
Length = 338
Score = 23.0 bits (47), Expect = 6.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 LHEFGTRVFPNQNYERPPXPLNKPKTIYGPP--KVYGPPKSYGPPKLGPPKL 152
L + VFP+ P P N+P + K PK Y P + PPKL
Sbjct: 69 LQQHPPSVFPHAAL--PHTPTNQPIVPFWQADLKPELSPKLYQPTDVSPPKL 118
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,834
Number of Sequences: 2352
Number of extensions: 11968
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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