Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O18
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +3

Query: 54  PXPLNKPKTIYGPPKVYGPPK-SYGPPKLGPP 146
           P P   P      P+   PP  S GPP  GPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 308 LNWLWRSVDWFRRSIV 261
           ++W+W    W RR+++
Sbjct: 174 IHWIWTPHGWMRRNVL 189


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 320 AVCCLNWLWRSVDWFRRSIV 261
           A+  L+ L R VDWFR++++
Sbjct: 46  AITPLDRLQRVVDWFRKNML 65


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 179 IRLFRRSISEFRWPEFRWXVRFWRAIDFW 93
           +RL     SE+R  E  W    WR   F+
Sbjct: 97  LRLPENMTSEYRLLEVDWLKNMWRPDSFF 125


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 379 VGSCIGGSSKGMFWTFNN 326
           +G+ IG  S+GM W   N
Sbjct: 486 IGNDIGNLSRGMLWDLPN 503


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 442 LIAMGLILEELLDQTLTRELIYQLQYMEHHF 534
           ++ +GL L +L+D  L  +++    ++EH +
Sbjct: 47  VVKLGLRLSQLIDLNLKDQILTTNVWLEHEW 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,469
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)