Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O17
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   108   2e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   106   8e-25
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    30   0.063
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   0.45 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.4  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   2.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   2.4  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   2.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   3.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   4.2  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   5.5  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    23   7.3  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.6  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.6  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    23   9.6  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    23   9.6  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  108 bits (259), Expect = 2e-25
 Identities = 52/71 (73%), Positives = 59/71 (83%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           KI EVK TIKFQ+KKVLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +
Sbjct: 146 KIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVI 205

Query: 113 KSTMGPPQRLY 81
           KSTMG P RLY
Sbjct: 206 KSTMGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  106 bits (254), Expect = 8e-25
 Identities = 49/71 (69%), Positives = 59/71 (83%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +
Sbjct: 146 KITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVV 205

Query: 113 KSTMGPPQRLY 81
           KSTMG P RLY
Sbjct: 206 KSTMGKPHRLY 216


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 30.3 bits (65), Expect = 0.063
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -3

Query: 275 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKSTMG 99
           G   F         +  GHV  T  ELA+NV   + F+   ++    + + S+H+K++  
Sbjct: 187 GATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQS 246

Query: 98  PPQRLY*INTINL-TLVSQKKKKKTRD 21
               L+  N  NL  L++  +K  T++
Sbjct: 247 IAIPLW--NNPNLKELIASSRKVVTKE 271


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = -3

Query: 299  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 144
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 143  HW 138
            H+
Sbjct: 2742 HY 2743


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 255 EEGVVPVCGRRSRRHDSR*TCPKCAPFN 172
           E  V  +C ++ R  +S   CP C P +
Sbjct: 95  ESNVCSMCSKQERTFESEAFCPSCYPLD 122


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 199 SSGVMST*PTATDRHNTFFIWNLMVPLTSSIFC 297
           S+G   +  T T+R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 HLLHLEFDGSLDFVNFLC 299
           HL     DG LDF+N +C
Sbjct: 609 HLASEGLDGELDFINVIC 626


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 72  VNLIQSLGWSHCRLHMQRAHIL 137
           + + QSLGW    +H+   HIL
Sbjct: 74  LGITQSLGWEMYEVHVPEPHIL 95


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 209 TPDELAQNVHLSINFLVSLL 150
           TPD LA+N  LSI F+ + L
Sbjct: 645 TPDLLAKNKELSIGFVTATL 664


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 63  IYCVNLIQSLGWSHCRLHMQRAHILPVLL 149
           I CVNL+   GW      M    +L +LL
Sbjct: 90  IQCVNLLYKHGWREAHNEMLTMQLLLMLL 118


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = -1

Query: 253 RRCCACLWPSVTST*LQMNLPKMCTFQSTSLCRYLRSTGRMCALC 119
           R C  CL      + L   LP    F    +  YL     +C LC
Sbjct: 496 RECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLC 540


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 139 QCFLSSDTRKLIERCTFWASS 201
           +CF  SD +KL +RC    SS
Sbjct: 143 KCFHRSDVQKLSKRCDILFSS 163


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 VHILGKFIWSHVDVTDGHRQAQHLLHLEFDGSL 278
           V IL    WS VDV D  + ++    +E+ G L
Sbjct: 67  VDILNFSFWSDVDVEDSGKHSKR-FSIEYKGKL 98


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 241 HNTFFIWNLMVPLTSSIF 294
           + T+F WN    L+SS+F
Sbjct: 350 NTTYFYWNSTSSLSSSVF 367


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 111 LHMQRAHILPVLLK*RHKEVD*KVHILGKFIW 206
           L  Q +H LPV  K      D K H LG  +W
Sbjct: 189 LKSQLSHTLPVGSKYFFVPCDKKHHTLGLLLW 220


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 100 PIVDFICRERTFCQCFLSSDTRKL 171
           P+V F   +R   +C LS D + L
Sbjct: 207 PVVKFQAHQRYITRCVLSPDVKHL 230


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 145 FLSSDTRKLIERC 183
           + +SD RKL+ERC
Sbjct: 299 YCNSDLRKLLERC 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,905
Number of Sequences: 5004
Number of extensions: 21636
Number of successful extensions: 72
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)