Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O17
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 101 1e-22
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 100 2e-22
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 96 4e-21
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 95 7e-21
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 44 2e-05
04_04_0401 - 24946801-24947562 43 5e-05
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 0.38
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 0.67
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 23 1.9
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 27 3.6
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 27 3.6
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004 26 4.7
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 26 4.7
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139... 26 4.7
01_06_1110 - 34582267-34582468,34582732-34582819,34589337-345894... 26 4.7
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649... 26 6.3
06_03_0300 + 19299378-19299688,19299839-19300268 25 8.3
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 101 bits (241), Expect = 1e-22
Identities = 42/71 (59%), Positives = 59/71 (83%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++
Sbjct: 141 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYI 200
Query: 113 KSTMGPPQRLY 81
KSTMG P R++
Sbjct: 201 KSTMGKPYRVF 211
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 100 bits (239), Expect = 2e-22
Identities = 42/71 (59%), Positives = 59/71 (83%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++
Sbjct: 159 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYI 218
Query: 113 KSTMGPPQRLY 81
KSTMG P R++
Sbjct: 219 KSTMGKPIRVF 229
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 96.3 bits (229), Expect = 4e-21
Identities = 42/71 (59%), Positives = 57/71 (80%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 141 KVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 200
Query: 113 KSTMGPPQRLY 81
KSTMG R++
Sbjct: 201 KSTMGKVYRVF 211
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/71 (59%), Positives = 57/71 (80%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 168 KVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 227
Query: 113 KSTMGPPQRLY 81
KSTMG R++
Sbjct: 228 KSTMGKVIRVF 238
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = -3
Query: 296 QKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLH 117
+++ +V + ++ C + VG +DM ++ +NV ++ V + K W NVRSLH
Sbjct: 177 EQVRKVMNSTFLYLRTGTCSGIKVGRLDMKEEDTVENVMAAVEAAVENVPKKWANVRSLH 236
Query: 116 MKS 108
+K+
Sbjct: 237 LKA 239
>04_04_0401 - 24946801-24947562
Length = 253
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -3
Query: 284 EVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 105
E ++ +++ C +V VGH M +E +NV ++ + + + W+NVR+LH+K+
Sbjct: 138 EAARRVELRVEGGTCRAVRVGHAAMAREEAVENVVAAVEAAAACVPRKWRNVRALHVKAP 197
Query: 104 MGPPQRLY 81
LY
Sbjct: 198 ESVALPLY 205
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 0.38
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 197 LAQNVHLSINFLVSLLKKH 141
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 215 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*INTINLTLVSQKKK 36
D + + VHLS+NF++ L++KH + + S G + + +TL K K
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKHPSIIPFMIYISDEGKHTERFAVRAKYMTLDPTKNK 321
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 23.4 bits (48), Expect(2) = 1.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 157 DTRKLIERCTFWASSSGV 210
D+++ + RCT W G+
Sbjct: 101 DSKEFVRRCTSWQRQGGI 118
Score = 22.6 bits (46), Expect(2) = 1.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 85 NLWGGPIVDFICRERTFCQCFLSSDTRKLIERC 183
++W + +C + +C + + K+IERC
Sbjct: 38 HIWDETYLYRVCSDGLLRRCVPTDEGLKIIERC 70
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 124 ERTFCQCFLSSDTRKLIERCTFWASSSGVM 213
E T C CFL D RC F AS+ V+
Sbjct: 336 ETTICMCFLEMDKLLHRLRCIFVASAGHVV 365
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 195 CPKCAPFNQLPCVAT*EALAECALS----AYEVDNGTTPEI 85
C K P QLP + T E A+S A+ DNGT P +
Sbjct: 313 CQKLPPLGQLPLLKTAEINGMSAVSIIDDAFYGDNGTFPSL 353
>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
Length = 681
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 75 NLIQSLGWSHCRLHMQRAHILPVLLK*RHKEVD*KVHILGKFI-W-SHVDVTDGHRQAQH 248
NL+Q +GW H R +L V ++ +D +H G F+ W +++ G A
Sbjct: 434 NLVQLIGWCH-----GRTELLLVYELVPNRSLDVHLHGNGTFLTWPMRINIVHGLGSALL 488
Query: 249 LLHLEFD 269
LH E+D
Sbjct: 489 YLHEEWD 495
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 75 NLIQSLGWSHCRLHMQRAHILPVLLK*RHKEVD*KVHILGKFI-W-SHVDVTDGHRQAQH 248
NL+Q +GW H R +L V ++ +D +H G F+ W +++ G A
Sbjct: 437 NLVQLIGWCH-----GRTELLLVYELFPNRSLDVHLHGNGTFLTWPMRINIVHGLGSALL 491
Query: 249 LLHLEFD 269
LH E+D
Sbjct: 492 YLHEEWD 498
>08_01_0169 -
1396657-1396710,1396801-1396843,1397440-1397904,
1397999-1399395
Length = 652
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 75 NLIQSLGWSHCRLHMQRAHILPVLLK*RHKEVD*KVHILGKFI-W-SHVDVTDGHRQAQH 248
NL+Q +GW H R +L V ++ +D +H G F+ W +++ G A
Sbjct: 424 NLVQLIGWCH-----GRTELLLVYELFPNRSLDVHLHGNGTFLTWPMRINIVHGLGSALL 478
Query: 249 LLHLEFD 269
LH E+D
Sbjct: 479 YLHEEWD 485
>01_06_1110 -
34582267-34582468,34582732-34582819,34589337-34589439,
34589886-34589914,34590114-34590144,34590621-34590822,
34591424-34591539,34591784-34592006,34592151-34592238,
34592336-34592407,34592485-34592560,34593822-34593880,
34595341-34595404,34595487-34595618
Length = 494
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 180 VHILGKFIWSHVDV---TDGHRQAQHLLHLEFD 269
V + G F+WS VDV +G++ L ++FD
Sbjct: 431 VDVRGYFVWSFVDVYELLEGYQSRSGLYRVDFD 463
>06_03_0049 +
15961706-15962017,15962952-15963851,15964769-15964913,
15964969-15965705
Length = 697
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +1
Query: 85 NLWGGPIVDFICRERTFCQCFLSSDTRKLIERC 183
++W P + +C + +C + + K+IERC
Sbjct: 37 HIWDEPYLYRVCSDGLLRRCVPTEEGLKIIERC 69
>06_03_0300 + 19299378-19299688,19299839-19300268
Length = 246
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 85 NLWGGPIVDFICRERTFCQCFLSSDTRKLIERC 183
+LW P + +C + +C + K+IE+C
Sbjct: 53 HLWDAPYLYRVCSDGLLRRCVPVDEGMKIIEKC 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,813,651
Number of Sequences: 37544
Number of extensions: 143508
Number of successful extensions: 356
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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