Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O17
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.075
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               31   0.17 
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.70 
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)                     27   2.8  
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              27   2.8  
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              27   2.8  
SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)                     26   4.9  
SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20)                 26   4.9  
SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)                 25   8.6  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.6  

>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -3

Query: 236 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 105
           ++ VGH      E+  N+  +++ L  ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365


>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 296 QKIDEVKGTIKFQMKKV 246
           QKI++V+ TIKFQMKK+
Sbjct: 61  QKIEDVRSTIKFQMKKI 77


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 296 QKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH 141
           ++++ +K  +    KKV   S AV  +  TPD ++  V   +N L SL KKH
Sbjct: 638 KELNRLKEELTQVSKKV---SSAVSEMSDTPDNVSNQVEKVVNELKSLKKKH 686


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 253 RRCCACLWPSVTST*-LQMNLPKMCTFQSTSLCRYLRSTGRMCALCI 116
           R+C  CL   V S   + + +  +CT     +C   RS  R CA C+
Sbjct: 193 RQCAPCLGHYVASVHHVYVVILPVCTMFMLPVCTMFRSLCRQCAPCL 239



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 253 RRCCACLWPSVTST*-LQMNLPKMCTFQSTSLCRYLRSTGRMCALCI 116
           R+C  CL   V S   + + +  +CT     +C    S  R CA C+
Sbjct: 84  RQCAPCLCRYVASVHHVYVVMSPVCTMFMLPVCTMFMSLCRQCAPCL 130


>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
          Length = 604

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 177 KVHILGKFIWSHVDVTDGHRQAQHLLHLEFDGSL 278
           K  +LG  +W++    DG  +   ++H+  DG L
Sbjct: 523 KTELLGMRVWNYNKSLDGTFRGAKIVHVSLDGKL 556


>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 858

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 179 GAHFGQVHLESCRRDRRPQTGTTPSSF 259
           G   G  H E CR D  P+T T+ + +
Sbjct: 167 GTESGDDHFEDCRDDSPPETSTSTTRY 193


>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 911

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 179 GAHFGQVHLESCRRDRRPQTGTTPSSF 259
           G   G  H E CR D  P+T T+ + +
Sbjct: 207 GTESGDDHFEDCRDDSPPETSTSTTRY 233


>SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 100 PIVDFICRERTFCQCFLSSDTRKLIERCTFWASSSGV 210
           P   F C  R F  CF+S D    +  C    +S  +
Sbjct: 84  PDDSFTCALRVFLHCFVSVDASNTVALCNMAIASRAI 120


>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
          Length = 633

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 100 PIVDFICRERTFCQCFLSSDTRKLIE---RCTFWASS 201
           P+  F C++  +CQ  +  D  ++I+   RC  W SS
Sbjct: 549 PVFSFSCKDHIYCQACILLDPYRIIDTPARC--WRSS 583


>SB_43513| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-20)
          Length = 337

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 132 CALSAYEVDNGTTPEIVLN*HNKF 61
           C+LSA ++ NG  P  VLN +N F
Sbjct: 70  CSLSAADLINGLIPLQVLNIYNSF 93


>SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)
          Length = 280

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 267 QIPNEEGVVPVCGRRSRRHDSR*TCPKCAP 178
           Q    E V+  CG    R   R TCP C P
Sbjct: 181 QSVGSEHVLLTCGHSFHRECHRKTCPICLP 210


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 112 FICRERTFCQC---FLSSDTRKLIERCTFWASSSGVMST*PTATDRHNTF 252
           F+  + TF      FLSSDT  L    TF +S +  +S+  T     +TF
Sbjct: 262 FLSSDTTFLSSDTIFLSSDTTLLSSDSTFLSSDTTFLSSDTTLLSSDSTF 311


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 267 QIPNEEGVVPVCGRRSRRHDSR*TCPKCAP 178
           Q    E V+  CG    R   R TCP C P
Sbjct: 509 QSVGSEHVLLTCGHSFHRECHRKTCPICLP 538


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 267 QIPNEEGVVPVCGRRSRRHDSR*TCPKCAP 178
           Q    E V+  CG    R   R TCP C P
Sbjct: 629 QSVGSEHVLLTCGHSFHRECHRKTCPICLP 658


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,344
Number of Sequences: 59808
Number of extensions: 168499
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)