Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O17
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   117   1e-27
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   117   1e-27
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   117   1e-27
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    31   0.15 
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   0.62 
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    28   1.1  
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      28   1.1  
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      28   1.1  
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...    27   3.3  
Z82283-2|CAB05284.1|  128|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    25   7.6  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U41540-4|AAP46284.1|  266|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U41540-3|AAK39231.2|  357|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    25   7.6  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  117 bits (282), Expect = 1e-27
 Identities = 53/71 (74%), Positives = 63/71 (88%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++
Sbjct: 116 KSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNI 175

Query: 113 KSTMGPPQRLY 81
           KSTMG PQR+Y
Sbjct: 176 KSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  117 bits (282), Expect = 1e-27
 Identities = 53/71 (74%), Positives = 63/71 (88%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++
Sbjct: 85  KSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNI 144

Query: 113 KSTMGPPQRLY 81
           KSTMG PQR+Y
Sbjct: 145 KSTMGKPQRVY 155


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  117 bits (282), Expect = 1e-27
 Identities = 53/71 (74%), Positives = 63/71 (88%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++
Sbjct: 146 KSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNI 205

Query: 113 KSTMGPPQRLY 81
           KSTMG PQR+Y
Sbjct: 206 KSTMGKPQRVY 216


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 290 IDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
           I+    T+ + +++ +  S V VGH+  +  +L +N+   +  + S     + N+RS+++
Sbjct: 345 IENALRTVVYPLRRYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYL 404

Query: 113 KSTMGPP 93
            ++ G P
Sbjct: 405 GASDGKP 411


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 236 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 93
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQNVRSL 120
           ++DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+N++ +
Sbjct: 30  QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMM 88


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQNVRSL 120
           ++DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+N++ +
Sbjct: 30  QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMM 88


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH-WQNVRSL 120
           ++DEV G +K  ++KVL     +  +D   D L +          +L +K+ W+N++ +
Sbjct: 30  QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMM 88


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  QSLGWSHCRLHMQRAHIL 137
           QSLGW H  +H    HIL
Sbjct: 48  QSLGWEHYMVHNPEKHIL 65


>Z82283-2|CAB05284.1|  128|Caenorhabditis elegans Hypothetical
           protein T23G4.2 protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -3

Query: 299 TQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELA-QNVHLSINF 165
           ++ + +V G +  +MKK + L+ +V H+++  D++  Q  +++I F
Sbjct: 14  SETVLDVLGNVSEKMKKGIELARSVAHLELCQDKITFQRRYVAIEF 59


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 58  VKFIVLI*YNLWGGPIVDFIC 120
           V ++++  +  WGGPI  F+C
Sbjct: 572 VSWVIIANHYGWGGPICSFMC 592


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 ILGKFIWSHVDVTDGHRQAQH 248
           +LGK  W ++ + +GHR   H
Sbjct: 648 LLGKIRWKYMIIDEGHRLKNH 668


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 ILGKFIWSHVDVTDGHRQAQH 248
           +LGK  W ++ + +GHR   H
Sbjct: 648 LLGKIRWKYMIIDEGHRLKNH 668


>U41540-4|AAP46284.1|  266|Caenorhabditis elegans Hypothetical
           protein F35H12.5b protein.
          Length = 266

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 176 SINFLVSLLKKHWQNVRSL 120
           +INF++SL+K+H + + S+
Sbjct: 103 TINFIISLIKRHNKTINSI 121


>U41540-3|AAK39231.2|  357|Caenorhabditis elegans Hypothetical
           protein F35H12.5a protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 176 SINFLVSLLKKHWQNVRSL 120
           +INF++SL+K+H + + S+
Sbjct: 194 TINFIISLIKRHNKTINSI 212


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 ILGKFIWSHVDVTDGHRQAQH 248
           +LGK  W ++ + +GHR   H
Sbjct: 648 LLGKIRWKYMIIDEGHRLKNH 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,746,779
Number of Sequences: 27780
Number of extensions: 125505
Number of successful extensions: 327
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)