Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O17
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 108 8e-25
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 108 8e-25
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 107 1e-24
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 105 7e-24
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 47 2e-06
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 44 3e-05
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.012
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 30 0.25
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 0.33
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 0.44
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 0.44
At4g02200.2 68417.m00295 drought-responsive family protein simil... 27 2.3
At4g02200.1 68417.m00294 drought-responsive family protein simil... 27 2.3
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 27 2.3
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 27 2.3
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 27 2.3
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil... 27 3.1
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-... 26 4.1
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 25 7.1
At5g59670.1 68418.m07481 leucine-rich repeat protein kinase, put... 25 9.4
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 108 bits (259), Expect = 8e-25
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 113 KSTMGPPQRLY 81
KSTMGPPQR++
Sbjct: 206 KSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 108 bits (259), Expect = 8e-25
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 113 KSTMGPPQRLY 81
KSTMGPPQR++
Sbjct: 206 KSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 107 bits (257), Expect = 1e-24
Identities = 45/71 (63%), Positives = 61/71 (85%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 113 KSTMGPPQRLY 81
KSTMGPPQR++
Sbjct: 206 KSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 105 bits (251), Expect = 7e-24
Identities = 44/71 (61%), Positives = 60/71 (84%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
K++E K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 147 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 206
Query: 113 KSTMGPPQRLY 81
KSTMGPP R++
Sbjct: 207 KSTMGPPNRVF 217
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = -3
Query: 296 QKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLH 117
++I++ G F M+ C ++ V + M D++ +NV ++N +V +L W+ +RSLH
Sbjct: 168 EQIEKACGAAMFFMRTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLH 227
Query: 116 MK 111
+K
Sbjct: 228 LK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = -3
Query: 293 KIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 114
+I++ G+ F ++ C + VG + M E+ +NV ++N LV L W VRSLH+
Sbjct: 189 QIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHL 248
Query: 113 K 111
K
Sbjct: 249 K 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 242 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 111
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = -3
Query: 299 TQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV-----SLLK--K 144
T+ + + K G KF+M K L V +G + + + L +NV +N L+ L K K
Sbjct: 318 TKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSK 377
Query: 143 HWQNVRSLHMKSTMG 99
+ V + H+ STMG
Sbjct: 378 YAGYVNAFHLCSTMG 392
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 0.33
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 197 LAQNVHLSINFLVSLLKKH 141
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 197 LAQNVHLSINFLVSLLKKH 141
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 197 LAQNVHLSINFLVSLLKKH 141
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g02200.2 68417.m00295 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 207
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 270 HQIPNEEGVVPVCGRRSRRH 211
HQ+ G+ PVC RR + H
Sbjct: 65 HQLDANNGICPVCSRRVKMH 84
>At4g02200.1 68417.m00294 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 214
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 270 HQIPNEEGVVPVCGRRSRRH 211
HQ+ G+ PVC RR + H
Sbjct: 65 HQLDANNGICPVCSRRVKMH 84
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 91 WGGPIVDFICRERTFCQCFLSSDTRKLIERCTFWASSSGVM 213
+G P+V I FC+ LSS R+ I C + G M
Sbjct: 182 YGNPLVKAIPEGDWFCRQCLSSKNREKIFSCCLCTTKGGAM 222
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 91 WGGPIVDFICRERTFCQCFLSSDTRKLIERCTFWASSSGVM 213
+G P+V I FC+ LSS R+ I C + G M
Sbjct: 182 YGNPLVKAIPEGDWFCRQCLSSKNREKIFSCCLCTTKGGAM 222
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +1
Query: 7 GREN*SRVXXXXXXDTKVKFIVLI*YNLWGGPIVDFICRERTFCQCFLSSDTRKLIERCT 186
G+ + S V D V+ Y+ G +DF ++ C SS R L+ + T
Sbjct: 403 GKFSVSHVKPHSSADNDVRSSAGSVYDAGGSRSMDFETVDQRDLSCGRSSVPRGLLNQHT 462
Query: 187 FWASSSGVMST*PTATDRHNTFFI 258
S+ G +TDR N F +
Sbjct: 463 PSPSARGPSDLRSNSTDRRNNFVL 486
>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
protein contains similarity to Swiss-Prot:Q9P926 nuclear
transport factor 2 (NTF-2) [Candida albicans]
Length = 334
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 153 T*EALAECALSAYEVDNGTTPEIV 82
T EALA C L +Y ++ G PE+V
Sbjct: 28 TSEALANCFLQSYFLNLGVYPEVV 51
>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
methionine--tRNA ligase / MetRS (cpMetRS) identical to
methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
GI:2266985
Length = 616
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 186 CAPFNQLPCVAT*EALAECALSAYE 112
C P +Q+PCVA E ALS Y+
Sbjct: 210 CCPVHQMPCVARKEDNYFFALSKYQ 234
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 173 LKGAHFGQVHLESCRRDRRPQTGTTP 250
L A VH E R+ +P+TGTTP
Sbjct: 1055 LSDAQLAAVH-EYLNREDKPETGTTP 1079
>At5g59670.1 68418.m07481 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 868
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 189 LGKFIWSHVDVTDGHRQAQHLLHLEFDGSL 278
LG +W+ +D+ D + + +LH+ SL
Sbjct: 127 LGPNLWAKIDLQDVNGTGEEILHIPTSNSL 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,340,273
Number of Sequences: 28952
Number of extensions: 115808
Number of successful extensions: 316
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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