Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O16
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    28   0.67 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   2.0  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   4.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   8.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    24   8.2  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 294 IYHHTGNSNSTRRTGCVIHRKIFSDDSHSKSS 199
           I HHT NSNS       ++ K  +D SH  S+
Sbjct: 574 INHHTSNSNSISSNSTSLNPKDVTDPSHIPSA 605


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 297 TCVLVNNYSPGYPSLSDPVFIWKKFV 374
           TC++VN +   YP+L   V I K F+
Sbjct: 367 TCLVVNGFMKKYPALRPLVIIIKHFL 392


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 9   DRRVFCIK---IIFYLHETFPPYFKYYWI 86
           ++ V C +   II Y+HETF P    Y+I
Sbjct: 279 EKTVLCFEDRSIIGYIHETFGPVSSPYYI 307


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 133 YFVRFMKFCGTNEINNPS*EVR*TFT 210
           +F+R  KF  TNE+ N S E +  FT
Sbjct: 105 FFLREQKFQATNELENMSPERKVIFT 130


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 270 NSTRRTGCVIHRKIFSDDSHSKSSANFLTRIIYFISPAKFHKPYEI 133
           N ++   C  + KIFSDD        F    + F SP   H+ YE+
Sbjct: 312 NPSKTPPCNDNFKIFSDDIKLIGCKIFAGVSLNFSSPKPAHRFYEL 357


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 224 QTIHTVKVQRTS*LGLFISLVPQNFINLTKYLLHFVRFFF 105
           +++  +K  +T  L   +  +  N++ L  YLL+FV+  F
Sbjct: 435 ESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSF 474


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 27  IKIIFYLHETFPPYFKYY 80
           IK IF+  +  PPYF  Y
Sbjct: 300 IKFIFFYQDVRPPYFGSY 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,210
Number of Sequences: 5004
Number of extensions: 32877
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)