Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O16
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         31   0.50 

>SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 213 HSKSSANFLTRIIYFISPAKFHKPYEIF 130
           HS  +A F   ++Y+ISP   HK +++F
Sbjct: 277 HSTMAAGFKPNVMYWISPGDVHKRFKVF 304


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 288 HHTGNSNSTRRTGCVIHRKIFSDDSHSKSSANFLT---RIIYFISPAKFHKP 142
           HHT NSNS ++T   I R   SD   SK+S +  +   + I  I P+K + P
Sbjct: 449 HHTENSNSVQQTKPTIDRTSNSDSKLSKASTDSQSGSEQPIASIEPSKQNTP 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,703,460
Number of Sequences: 59808
Number of extensions: 210883
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)