Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O16
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    28   2.4  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   4.1  
AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    26   9.5  

>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 282 CDDIYTCVLVNNYSPGYPSLSDPVFIW 362
           C D+Y C  +  Y+    ++S P++IW
Sbjct: 47  CFDVYYCYTLTTYNIFKNTMSGPIYIW 73


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 27  IKIIFYLH-ETFPPYFKYYWIFNLFMIKKKSNE 122
           I I  +LH + F  +F Y+ +F+L M+KK ++E
Sbjct: 594 IPIYHFLHSKKFTVWFAYFSLFHLRMVKKMADE 626


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 282  CDDIYTCVLVNNYSPGY-PSL 341
            CDD Y C L+NN++  + PSL
Sbjct: 8516 CDDEYCCQLLNNFAKSFDPSL 8536


>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -2

Query: 339 NSDNQANSYSLTRMCIYHHTGNSNSTRRTGCVIHRKIFSDDSHSKSSANFLTRIIYFISP 160
           NS    N   L  +  Y +   + S  +   V    IFS+ S   SS NF   ++  +SP
Sbjct: 213 NSVQTNNKKLLDDLAEYVNLEKALSQHKFNTVQPGYIFSERSDFVSSVNFSRLVLEMMSP 272

Query: 159 AK---FHKPYEI-FITLR*IFF 106
            K   F + Y+I ++T   +FF
Sbjct: 273 DKRTLFPEVYQIMYLTNTSLFF 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,212
Number of Sequences: 27780
Number of extensions: 174415
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)