Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O16
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   0.79 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.4  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    20   9.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -3

Query: 302 ACVYIITQEILIQPGAPAVLFIAKYFQTIHTVKVQRTS*LGLFISLVPQNFI 147
           A +  I   ++I PG P +  +   ++  +T      + L +  ++VP+N +
Sbjct: 149 AAIVGIVMVLIIHPGDPRIKSVVTAYKADYTKISTLDAILDIIRNMVPENLV 200


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 233  KYFQTIHTVKVQRTS*LGLFISLVPQNFINLTKY 132
            +Y+ TIH V +Q+ +  G     +P+   +++ Y
Sbjct: 1664 RYYATIHKVALQQAANTGGGPDKIPETAEDISPY 1697


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 233  KYFQTIHTVKVQRTS*LGLFISLVPQNFINLTKY 132
            +Y+ TIH V +Q+ +  G     +P+   +++ Y
Sbjct: 1660 RYYATIHKVALQQAANTGGGPDKIPETAEDISPY 1693


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 NYSPGYPSLSDPVFIWKKFVISKI 386
           N+SP Y  +++    WK  +  KI
Sbjct: 663 NHSPNYDQVTNWYMGWKGMLSEKI 686


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 45  LHETFPPYFKYYWIFNLFMIKK 110
           L + F  YF+ Y + +  +IKK
Sbjct: 10  LKKDFGTYFQQYCLHHKILIKK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,257
Number of Sequences: 438
Number of extensions: 2046
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)