Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O16
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    29   1.3  
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp...    28   2.2  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    27   5.1  
At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family prot...    27   5.1  

>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -2

Query: 342  LNSDNQANSYSLTRMCIYHHTGNSNSTRRTGCVIHRKIFSDDSHSKSSANFLTRIIYFIS 163
            LN   Q N   L R CI  H G       T C+I++ +    S      +   RII  I 
Sbjct: 1112 LNEKQQENQELLIR-CIVQHLGFQGKRPVTACIIYKCLLQWRSFEVERTSVFDRIIQTIG 1170

Query: 162  PA 157
             A
Sbjct: 1171 QA 1172


>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
           expressor of Pathogensis Related genes 5 (cpr5);
           regulator of disease resistance and senescence (Plant J.
           (2001)26(4)409-420.
          Length = 564

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 354 KLDHLNSDNQANSYSLTRMCIYHHTGNSNSTRRTGCVIHR 235
           K + +++D  ++SY     C    T NSNST+R   V+HR
Sbjct: 59  KKEIMDNDEASSSY-----CSTSSTSNSNSTKRVTRVVHR 93


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -2

Query: 345  HLNSDNQANSYSLTRMCIYHHTGNSNSTRRTGCVIHRKIFSDDSHSKSSANFLTRIIYFI 166
            HLN   Q N   L + CI  + G +       CVI++ +    S      +   RII  I
Sbjct: 1121 HLNEKQQENQDLLVK-CISQNLGYNGDKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTI 1179

Query: 165  SPA 157
            + A
Sbjct: 1180 ATA 1182


>At3g53100.1 68416.m05852 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382) [Arabidopsis thaliana], SP|P40603
           Anther-specific proline-rich protein APG {Brassica
           napus}; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 351

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 318 SYSLTRMCIYHHTGNSNSTRRTGCVIHRKIFSDDSH--SKSSANFLTRIIYFISP 160
           S SLTR   Y+    +  TR  G    R +FS   H  S  S++FL    Y+I+P
Sbjct: 126 SISLTRQLSYYRAYQNRVTRMIGRGNARILFSRGIHILSAGSSDFLQN--YYINP 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,675
Number of Sequences: 28952
Number of extensions: 147465
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)