Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O15
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    29   0.95 
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)          29   1.3  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   2.2  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   2.9  
SB_38825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   27   6.7  
SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 26   8.8  

>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
 Frame = +2

Query: 17  SVTISALE*IENIKYTKM--LGVQSLLRTNRQILKNVLQQRNMSVIATPARNKISKAEVV 190
           S+T+S +   +N +  K+  +G+  +L      LKNVL QRN+   +TPA  +I+    +
Sbjct: 118 SITLSGVVFADNSECLKVEVVGIPRVLSNLMLQLKNVLFQRNLKNKSTPALVEITGRTFL 177

Query: 191 --VLGSLMVVGWSAVPVW 238
             V  ++ V+G +A+P++
Sbjct: 178 TSVWSNVSVMG-NALPLF 194


>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
          Length = 999

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 86  LLRTNRQILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVV 214
           LL  NR+  + + QQR M ++  P R  +S +  V +GS + V
Sbjct: 741 LLIDNRRAYQALRQQRTMGMVYGPVRRLLSPSAAVRIGSTISV 783


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 219 QPTTIKLPNTTTSAFEILFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNILVYFIFSIY 40
           QPTT       T A  +L L    ITLM    + ++   R +L+    P  L Y  + IY
Sbjct: 357 QPTTFTHAPYYTYARNLLHLCTHPITLMH---APYYNYARYLLQLCTQPTTLTYAPYYIY 413

Query: 39  SKALI 25
           ++ L+
Sbjct: 414 ARNLL 418


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -3

Query: 288 VVCFYSLSL*CLMLTRTHTGTADQPTTIKLP---NTTTSAFEILFLAGVAITLMF--LCW 124
           ++CFYS S+  L   R     A Q  +  LP    + +S   I F A   +T +F  L W
Sbjct: 171 IICFYSFSVVILESRRHQNAIAAQHRSTGLPAFQRSASSTVFIFFTALFVLTYIFMGLAW 230

Query: 123 STFFRICRLV 94
               +IC L+
Sbjct: 231 R---KICVLI 237


>SB_38825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 PHWDSRPAHHHQTAQHNH 185
           PH+D+   HHH   ++NH
Sbjct: 58  PHYDNHDHHHHYDHRYNH 75


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +3

Query: 207 WWWAGLLSQCGFSSTSNTT--ETRNKNI 284
           WWW  L   CG+   S  T  E   +N+
Sbjct: 82  WWWVELEGSCGYIPVSYVTSEEVHRRNL 109


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 106  DPKECAPTEKHERYRYTR-*K*DFKSRSGC 192
            DP+ C     HE  ++TR  K D ++R GC
Sbjct: 1603 DPQRCTLLRSHEPIQWTRSKKDDLRNRRGC 1632


>SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 194 LGSLMVVGWSAVPVWVLVN--IKHYRDKE*KHTTLKSV 301
           L S +V+G  +VP    +   +KHYR+K  K   LKS+
Sbjct: 146 LSSSVVLGSDSVPSHDTMQSFLKHYREKRTKEQRLKSI 183


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 79  PEPPQNQPTDPKE--CAPTEKHERYRYTR 159
           P+ P  QPT PKE   AP E+ E  R  R
Sbjct: 884 PDSPTEQPTAPKEQQTAPKEQPELRRSNR 912


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,722
Number of Sequences: 59808
Number of extensions: 241238
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)