Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O15
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32680.1 68415.m03995 disease resistance family protein conta...    29   1.4  
At5g01400.1 68418.m00053 expressed protein contains low similari...    27   3.1  
At3g43280.1 68416.m04568 hypothetical protein predicted protein,...    27   3.1  
At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate...    27   3.1  
At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    27   5.5  
At2g38500.1 68415.m04730 expressed protein                             27   5.5  
At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1) ident...    26   7.2  
At2g37710.1 68415.m04624 lectin protein kinase, putative similar...    26   7.2  

>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 50  NIKYTKMLGV-QSLLRTNRQILKNVLQQRNMS-VIATPARNKISKAEVVVLGSLMVVGWS 223
           ++ Y K  GV  S L T   +    L++ N++  +     +  S+ E++ LGS    G  
Sbjct: 273 DLSYNKFFGVIPSSLLTLPFLAHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQI 332

Query: 224 AVPVWVLVNIKH 259
             P+  L+N+KH
Sbjct: 333 LEPISKLINLKH 344


>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 159  AGVAITLMFLCWSTFFRICRLVLRRLWTPNILVYFIFSIYSKA 31
            +  ++T    C S +F +C  VLR      ++   +F+IY  A
Sbjct: 920  SSTSVTEAQRCLSLYFALCTKVLRIFTILRLMTNLVFNIYKNA 962


>At3g43280.1 68416.m04568 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 157

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 213 TTIKLPNTTTSAFEILFLAGVAITLMFLCWSTFFRICRLV-LRRLWTPNILVYFIFSIYS 37
           T++ LP  T +      L G A    ++CW   FR+ R      L  PN L   I  +Y+
Sbjct: 44  TSLNLPTITLTHLVPCLLLGDASQPSWICWIKPFRLARSTSFSSLLKPNNLGLLIRRLYA 103


>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 305

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 130 EKHERYRYTR*K*DFKSRSGCVGQFDGGGLVCCPSVGSRQH 252
           EK  R+ +TR    F S +GCV  F+GG +V      SR H
Sbjct: 17  EKAARFFFTRFLTHFIS-TGCVTIFEGGNMVTFEGKDSRCH 56


>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 77  VQSLLRTNRQILKNVLQQRNMSVIATPARN 166
           +++L+R   Q+L +  QQR+  +++ P+RN
Sbjct: 148 IKALVRVQDQVLNHHQQQRSRVLLSPPSRN 177


>At2g38500.1 68415.m04730 expressed protein
          Length = 356

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 276 YSLSL*CLMLTRTHTGTADQPTTIKLPNTTTSAFEILF 163
           +S+ L C+ L  +HT  A    T  L +   +AF +LF
Sbjct: 305 FSVELKCMSLFLSHTSIATTSKTFSLTHQIFTAFLLLF 342


>At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1)
           identical to magnesium/proton exchanger AtMHX
           [Arabidopsis thaliana] gi|6492237|gb|AAF14229;
           Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 539

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 180 AFEILFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNIL 64
           A E+  ++ + + L+ L WS +  I   ++  +W+PN++
Sbjct: 158 AGELKKISDLGVWLVELVWSFWAYIWLYIILEVWSPNVI 196


>At2g37710.1 68415.m04624 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 675

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 204 KLPNTTTSAFEILFLAGVAITLMFLCWSTFFRICRLVLRR 85
           KLP          +  G+ +  +FL +S  F +C +V RR
Sbjct: 277 KLPRFEPKRISEFYKIGMPLISLFLIFSFIFLVCYIVRRR 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,662
Number of Sequences: 28952
Number of extensions: 174890
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)