Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O13
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         30   0.67 
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         27   4.7  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         27   4.7  
SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)                       27   4.7  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   4.7  
SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)          27   4.7  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_20131| Best HMM Match : RVT_1 (HMM E-Value=0.0049)                  27   8.2  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +2

Query: 146 TPFGQVKLNEIGGWLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPFFQLLVGSMT 325
           T FG+ KL   G ++ R +   +   G  SR W  ++ KYV  K   M PF+  +  +  
Sbjct: 2   TSFGETKLKNAGDYVVRNASLENMWRGM-SRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60

Query: 326 FFYMINYGKMK 358
             Y I Y  +K
Sbjct: 61  LNYAIEYNHLK 71


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 51   CEKKWLSVITRKNTTLLSTGRMIQPVIMASL 143
            CEK W SVI+R+ TTL+   R +  V +A+L
Sbjct: 1093 CEKAWTSVISRQ-TTLVRMERPVSTVTVATL 1122


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 322  HAANKQLEEWSHAYFFRLNIFVLPPP 245
            H+A K LE W+  +  RL+++  PPP
Sbjct: 2285 HSAMKMLELWTQTFLGRLDMYQGPPP 2310


>SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 YGKPDTPFGQVKLNEIGGW 187
           YG+   PFG+ KL +IG W
Sbjct: 164 YGEQKIPFGEQKLEQIGPW 182


>SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 236 RAWWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYMINYGKMKHHRNYKYH 382
           R +  ++H  +    V +  F +L V   + ++ + Y   +H+R+Y+Y+
Sbjct: 21  RNYRHYRHTVITVSTVNLLAFVKLSVYVTSPYFPVVYRSNRHYRHYRYY 69


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 296 FFQLLVGSMTFFYMINYGKMKHHRNYKYH 382
           FF L    M FFY+  Y K++HH+    H
Sbjct: 184 FFVLPFALMCFFYLKIYLKIRHHKKQTAH 212


>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 277 KSRHGSILPTACWQHDFLLYDQLW 348
           +SR   +L T+C +H   LYD  W
Sbjct: 418 RSRTSGLLLTSCMEHSQSLYDDTW 441


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 277  KSRHGSILPTACWQHDFLLYDQLW 348
            +SR   +L T+C +H   LYD  W
Sbjct: 1187 RSRTSGLLLTSCMEHSQSLYDDTW 1210


>SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)
          Length = 151

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 179 RFHSVLPVQRVYQACHNNGLDHTARGQQGCILSGNHRKPFFLTNLSNTIENR 24
           RF S L  Q        + ++ T    Q    +GNH KPF      N + NR
Sbjct: 93  RFISCLTPQNPVYRLVQDRIEATTHSYQLRTRTGNHIKPFATNRFGNFVTNR 144


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 110 PYDPARYYGKPDTPF-GQVKLNEIGGWLGRRSKTPSAVMGACSRAWW 247
           P  P R Y  PD+PF G+  LN       R+S +P+      +  +W
Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS--RSRKSSSPTTTQTTMATIYW 303


>SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)
          Length = 405

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 185 WLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYMINYGKMK-- 358
           + G    TP  VM + ++ W R++    QP  VG   F+ +   S   +   N G +K  
Sbjct: 318 YCGEFEVTPRPVMSSSNKLWIRFRSNSSQP-SVG---FYAVYFPSCNAYLTNNSGVIKSP 373

Query: 359 HHRNYKYH 382
           +H N  YH
Sbjct: 374 NHPNEYYH 381


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 234 LQAPITAEGVLLLRPNHPP 178
           L  PI   GV +LRP+HPP
Sbjct: 51  LDEPIPEIGVPILRPSHPP 69


>SB_20131| Best HMM Match : RVT_1 (HMM E-Value=0.0049)
          Length = 186

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 322 DFLLYDQLWQDEAPQELQVPLNE 390
           D  LY  L  DE+P  LQ PLN+
Sbjct: 120 DCALYLHLTSDESPSHLQQPLNK 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,900,634
Number of Sequences: 59808
Number of extensions: 306629
Number of successful extensions: 831
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)