Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O13
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g33406.1 68418.m03990 hAT dimerisation domain-containing prot...    29   1.7  
At2g25180.1 68415.m03011 two-component responsive regulator fami...    28   2.9  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   3.8  
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F...    27   3.8  
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F...    27   3.8  
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    27   5.1  
At2g43970.2 68415.m05468 La domain-containing protein contains P...    27   5.1  
At2g43970.1 68415.m05467 La domain-containing protein contains P...    27   5.1  
At2g02835.1 68415.m00229 hypothetical protein                          27   5.1  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    27   6.7  
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /...    27   6.7  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   6.7  
At5g07330.1 68418.m00837 expressed protein                             26   8.9  
At5g01900.1 68418.m00109 WRKY family transcription factor contai...    26   8.9  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    26   8.9  

>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein
           low similarity to transposase [Fusarium oxysporum f. sp.
           lycopersici] GI:3126916; contains Pfam profile PF05699:
           hAT family dimerisation domain
          Length = 485

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 59  KMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQ---VKLNEI-GGWLG 193
           KMAF    + ++  +H P   A YY  P+  +GQ   +   E+ GG+LG
Sbjct: 123 KMAFEIIDRRWDIQLHRPLHAAGYYLNPEFHYGQPDDIGYEEVLGGFLG 171


>At2g25180.1 68415.m03011 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 596

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 322 HAANKQLEEWSHAYFFRLNIFVLPPPPGSAASAHNS*RSLTPATQPSADFIQF 164
           H  NK+LE WS+A    ++    PPPP   +++ N    ++P      D +++
Sbjct: 426 HQINKRLEHWSNA----VSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEW 474


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 253 PPPPGSAASAHNS*RSLTPATQPSADFIQF 164
           PPPP   +  H   R +TP+  P +  + F
Sbjct: 155 PPPPPPPSKTHEPSRRITPSPPPPSKILPF 184


>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 74  DYPKEYNPAVHGPYDPARYYG 136
           DYP EY  AV G YD    YG
Sbjct: 67  DYPNEYITAVGGSYDTVFGYG 87


>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 74  DYPKEYNPAVHGPYDPARYYG 136
           DYP EY  AV G YD    YG
Sbjct: 67  DYPNEYITAVGGSYDTVFGYG 87


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 62  MAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTP-SAVMG--AC 232
           MA+  Y   ++P V GP  PA  +  P  P G+   + +  WL      P  AV+G   C
Sbjct: 202 MAYDFYGPGWSP-VTGP--PAALFHDPSNPAGRSGNSGLRKWLDEAKLPPKKAVLGFPYC 258

Query: 233 SRAW 244
             AW
Sbjct: 259 GWAW 262


>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -3

Query: 220 NS*RSLTPATQPSADFIQFYLSKGCIRLAIITGWIIRPVDSRVVFFRVITESHFFSQIYQ 41
           N+   L    Q SA        K   R++ IT   I  + SR++    + E H +  + +
Sbjct: 244 NNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMK 303

Query: 40  ILSKIG 23
           I S +G
Sbjct: 304 IFSTVG 309


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -3

Query: 220 NS*RSLTPATQPSADFIQFYLSKGCIRLAIITGWIIRPVDSRVVFFRVITESHFFSQIYQ 41
           N+   L    Q SA        K   R++ IT   I  + SR++    + E H +  + +
Sbjct: 244 NNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMK 303

Query: 40  ILSKIG 23
           I S +G
Sbjct: 304 IFSTVG 309


>At2g02835.1 68415.m00229 hypothetical protein
          Length = 198

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 80  PKEYNPAVHGPYDPARYYGKPDTPF 154
           P+EY  ++  PY P      PD+PF
Sbjct: 121 PEEYEDSLISPYIPEAVLRSPDSPF 145


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 304 LEEWSHAYFFRLNIFVLPPP 245
           L++WS  Y+F    FVL PP
Sbjct: 145 LKKWSFRYWFAFPAFVLDPP 164


>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
           phosphatase and tensin, putative (PTEN1) identical to
           phosphatase and tensin homolog [Arabidopsis thaliana]
           GI:21535746
          Length = 412

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 62  MAFGDYPKEYNPAVHGPYDPARYYGKPDT-PF 154
           M   D+ K YN  +   YDP  +YG+ +  PF
Sbjct: 87  MRHPDHYKVYNLCIEESYDPDNFYGRVERFPF 118


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 195 RPNHPPISFSFTC 157
           RP+HPP+S  F+C
Sbjct: 31  RPSHPPLSICFSC 43


>At5g07330.1 68418.m00837 expressed protein 
          Length = 165

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 238 SAASAHNS*RSLTPATQPSADFIQFYLSKGCIRLAIITG 122
           +AA+ +   R+ T A     DF   Y+S G I L++  G
Sbjct: 33  TAATEYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFG 71


>At5g01900.1 68418.m00109 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 263

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = -1

Query: 255 CHLHQARLQAPITA------EGVLLLRPNHPPISFS 166
           C LHQA    PI        EG  ++R  HP ISFS
Sbjct: 169 CQLHQAYATFPIDTSDFEEHEGSHMIRFGHPNISFS 204


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 195 RPNHPPISFSFTC 157
           +P HPP+S  FTC
Sbjct: 37  QPTHPPLSICFTC 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,793,034
Number of Sequences: 28952
Number of extensions: 215516
Number of successful extensions: 639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)