Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O12
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   149   3e-37
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   146   2e-36
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   1.9  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   1.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   3.3  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   4.4  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    25   4.4  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   5.8  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   7.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  149 bits (360), Expect = 3e-37
 Identities = 78/139 (56%), Positives = 100/139 (71%), Gaps = 4/139 (2%)
 Frame = -2

Query: 465 ILRRLFMSRINRPPSSLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALH 292
           IL+RLF S+ NRPP S+S++A     K  + EG   V+VGTV++D RL T+PK++VAAL 
Sbjct: 47  ILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALR 106

Query: 291 VTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTK 112
            T+ ARARIL AGGE+LT DQLALRAPTG  TVL++G+++AREA RHFG     P  H  
Sbjct: 107 FTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKA 163

Query: 111 PYVRTKGH--EHARPSRRS 61
           PYVR++G   E AR  R+S
Sbjct: 164 PYVRSEGRKFERARGRRKS 182


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  146 bits (353), Expect = 2e-36
 Identities = 76/139 (54%), Positives = 99/139 (71%), Gaps = 4/139 (2%)
 Frame = -2

Query: 465 ILRRLFMSRINRPPSSLSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALH 292
           IL+RLF S+ NRPP S+S++A     K  + +    VVVGTV++D R+ T+PK+++AAL 
Sbjct: 47  ILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALR 106

Query: 291 VTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTK 112
            T+ ARARIL AGGE+LT DQLALRAPTG  TVLV+G+++AREA RHFG     P  H  
Sbjct: 107 FTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKA 163

Query: 111 PYVRTKGH--EHARPSRRS 61
           PYVR++G   E AR  R+S
Sbjct: 164 PYVRSEGRKFERARGRRKS 182


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 433 PTSEFFVPFGTPHEEAYTRGFDRCSRWHSLQ*CEALHHS*NDSSRTTR 290
           P ++ F+PF TP  +AY +   R  R  S++  ++  +  N   R +R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR-SSVRRSQSFKNRRNGKPRISR 255


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -2

Query: 372 LIAVVVGTVSNDVRLYTI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 196
           L+ +VV  ++NDVRL+ I  +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 195 VLVQGRRNAREAVRHFGPAPG 133
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 207 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 124
           G    L Q RR     V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 234 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 67
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTR 84


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 234 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPSR 67
           DQ +   P G   V+    R   +  +  G    A RS  KP+++   + H  P+R
Sbjct: 30  DQGSKSHPFGH-AVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTR 84


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 139
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 209 LDVRQYWFRVAVMLVRQFVTSGRRLVHLVHILNHTCAPRDTS 84
           L+ R+ +++     + + +  G R + LV  +N  C P DT+
Sbjct: 161 LEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTA 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,341
Number of Sequences: 5004
Number of extensions: 39006
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)