Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O12
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 173 5e-44
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 173 6e-44
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 157 3e-39
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 29 1.4
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172... 28 3.3
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 5.8
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 27 7.6
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 27 7.6
01_01_0512 + 3735005-3735580 27 7.6
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 173 bits (422), Expect = 5e-44
Identities = 87/137 (63%), Positives = 103/137 (75%)
Frame = -2
Query: 468 IILRRLFMSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHV 289
+IL+RLFMS+ NRPP SL RLA+ M+ E IAV+VGTV++D R+ IPKM V AL
Sbjct: 47 VILKRLFMSKTNRPPLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRF 105
Query: 288 TEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKP 109
TE ARARI+ AGGE LTFDQLALRAP G TVL++G +NAREAVRHFG APG P SHTKP
Sbjct: 106 TETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKP 165
Query: 108 YVRTKGHEHARPSRRSN 58
YVR+KG + + R N
Sbjct: 166 YVRSKGRKFEKARGRRN 182
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 173 bits (421), Expect = 6e-44
Identities = 87/143 (60%), Positives = 107/143 (74%), Gaps = 6/143 (4%)
Frame = -2
Query: 468 IILRRLFMSRINRPPSSLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTIPKMT 307
+IL+RLFMS+ NRPP S+ RL R M K P R + IAV+VGTV++D R+Y +P M
Sbjct: 47 VILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMK 106
Query: 306 VAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 127
VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P
Sbjct: 107 VAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 166
Query: 126 RSHTKPYVRTKGHEHARPSRRSN 58
S+TKPYVR+KG + + R N
Sbjct: 167 HSNTKPYVRSKGRKFEKARGRRN 189
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 157 bits (382), Expect = 3e-39
Identities = 86/154 (55%), Positives = 105/154 (68%), Gaps = 17/154 (11%)
Frame = -2
Query: 468 IILRRLFMSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHV 289
+ILRRLFMS+ NRPP SL RL R M+ +E IAV+VGTV++D R+Y +P M VAAL
Sbjct: 47 VILRRLFMSKTNRPPLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRF 104
Query: 288 TEKARARILAAGGEILTFDQLALRAPTGRKT-----------------VLVQGRRNAREA 160
TE ARARI+ GGE LTFDQLALRAP G+ T VL++G +NAREA
Sbjct: 105 TETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREA 164
Query: 159 VRHFGPAPGAPRSHTKPYVRTKGHEHARPSRRSN 58
V+HFGPAPG P S+TKPYVR+KG + + R N
Sbjct: 165 VKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRN 198
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 394 HVACQTGQRTRRSVDTAHKQSP 459
HV C+ + RRS + AHKQ+P
Sbjct: 682 HVCCKAKEMLRRSSELAHKQNP 703
>10_01_0147 -
1722947-1723168,1723268-1723464,1723654-1723690,
1724688-1725584
Length = 450
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +3
Query: 159 LPHEHYGDPEPVLSYVQWAHGGLTGQTLESHLQQPRCGHELSQ*RVVRLLSF*EWCKASH 338
L H+ +G + + + H L+ T+E+HLQ C L+ VV L+ +WC S+
Sbjct: 301 LLHDLHGKYPSIAIFSDYIHLNLSKLTIENHLQW--CPEFLN---VVN-LTLGQWCLDSN 354
Query: 339 HWRLCQRLQRSNPRV 383
+ L LQ S PR+
Sbjct: 355 FYALIVFLQNS-PRL 368
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 360 VVGTVSNDVRLYTIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 220
++G++ DV +I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 ETVPTTTAIKPSRVGFFMWR-AKRDKELGGRLIRLI 448
E P TTA KP RV F + + K D+E+ G L L+
Sbjct: 673 EINPNTTAPKPKRVRFALPKDTKIDREVRGELQELM 708
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 131 APGAGPK*RTASRALRRP*TSTVLRPVGARRANWSNVRISPPAAKMRARAFSVTCSAAT 307
A AG + R + RRP T + L P G+R A S+ RIS P + A + + S+++
Sbjct: 66 AEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSS-RISAPTSPSSAPSSPSSSSSSS 123
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 451 VYEPYQPTSEFFVPFGTPHEEAYTRGFDRCSR 356
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,986
Number of Sequences: 37544
Number of extensions: 306918
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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