Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O12
(472 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 29 1.9
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084) 28 4.5
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 27 7.8
SB_472| Best HMM Match : Cas1p (HMM E-Value=0) 27 7.8
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 144 bits (348), Expect = 4e-35
Identities = 74/137 (54%), Positives = 92/137 (67%), Gaps = 5/137 (3%)
Frame = -2
Query: 471 QIILRRLFMSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALH 292
QI+++RL MSR RPP SL+RL R MK + I VVVG++++D R++ +P + + AL
Sbjct: 152 QIVMKRLCMSRTKRPPLSLARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALR 211
Query: 291 VTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTK 112
+E ARARIL AGGEILTFDQLALRAP G+ TVL+QG R AREA RH G APG P S T
Sbjct: 212 FSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTN 271
Query: 111 -----PYVRTKGHEHAR 76
Y+ T G R
Sbjct: 272 WCGDLDYIGTDGDAQCR 288
>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.3 bits (65), Expect = 0.84
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 73 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 222
RPC+ H + T T P + CLTSIT+T Q CLTS T+
Sbjct: 55 RPCLTSMTSTHPQPYL-TSITTTEPPL--CLTSITSTDPQLCLTSITSTD 101
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 160 CLTSITATLNQYCLTSSGRTE 222
CLTSIT+T Q CLTS T+
Sbjct: 21 CLTSITSTDPQLCLTSITSTD 41
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +1
Query: 73 RPCVLVSLGAHVWFSM*TRCTRRRPEVTNCLTSITATLNQYCLTSSGRTE 222
RPC L S+ T T P+ CLTSIT+T Q CLTS T+
Sbjct: 103 RPC-LTSITLTYPRPYLTSITSTHPQP--CLTSITSTDPQPCLTSIKSTD 149
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 160 CLTSITATLNQYCLTSSGRTE 222
CLTSIT+T Q CLT TE
Sbjct: 201 CLTSITSTDPQPCLTGINTTE 221
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 160 CLTSITATLNQYCLTSSGRTE 222
CLTSIT+T Q CLTS T+
Sbjct: 9 CLTSITSTDPQPCLTSITSTD 29
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 110 HTCAPRDTSTHGRAVAPMS 54
H CA STHGRAVA M+
Sbjct: 14 HACATETVSTHGRAVALMA 32
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -2
Query: 414 SRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHVTEKARARILAAGGEILTF 235
SRL MK PT++G+ V VS +T A E+ RAR+L G +
Sbjct: 92 SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150
Query: 234 DQLALRAPTGRKTVLVQGR 178
D + + +K ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 252 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRS 121
GE+++ D++ +A R + N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
Length = 682
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 246 ILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRT 97
I+T + AL A GR +V GRR AVR AP ++ K Y++T
Sbjct: 58 IVTGRRFALTAVVGRVAGIVTGRRFILTAVRVERFAPKERQTALKGYLKT 107
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 246 ILTFDQLALRAPTGRKTVLVQG-RRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEHARPS 70
I +D + P G LV G R + + G A RS KP+V+ + H P+
Sbjct: 26 IKNYDDGSSDKPYGH--ALVAGVARYPLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPT 83
Query: 69 RRS 61
R S
Sbjct: 84 RYS 86
>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
Length = 932
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 316 RNGVKPHIIGDCANDYSDQTLACRLLHVACQTGQRTRRSVDTAHKQS 456
R+G+ P + Y + T C + H A + +R R+ +T H QS
Sbjct: 495 RHGLAPRMPASDPYGYHNDTGTCHI-HTAERLARRNPRNTETNHDQS 540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,269
Number of Sequences: 59808
Number of extensions: 338464
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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