Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O12
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 168 1e-42
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 165 1e-41
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 152 1e-37
At2g18850.1 68415.m02196 SET domain-containing protein low simil... 28 2.8
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 28 3.7
At1g61900.2 68414.m06984 expressed protein contains similarity t... 27 4.8
At1g61900.1 68414.m06983 expressed protein contains similarity t... 27 4.8
At5g24290.2 68418.m02858 integral membrane family protein contai... 27 8.5
At5g24290.1 68418.m02857 integral membrane family protein contai... 27 8.5
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 27 8.5
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 27 8.5
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 168 bits (409), Expect = 1e-42
Identities = 84/138 (60%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Frame = -2
Query: 468 IILRRLFMSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHV 289
+IL+RLFMS++N+ P SLSRL M +E IAV+VGT+++D+R++ IP M V AL
Sbjct: 47 VILKRLFMSKVNKAPLSLSRLVEFMTG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRF 104
Query: 288 TEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKP 109
TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P SH+KP
Sbjct: 105 TERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKP 164
Query: 108 YVRTKGH--EHARPSRRS 61
YVR KG E AR R+S
Sbjct: 165 YVRAKGRKFEKARGKRKS 182
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 165 bits (401), Expect = 1e-41
Identities = 83/138 (60%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Frame = -2
Query: 468 IILRRLFMSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHV 289
+IL+RLFMS++N+ P SLSRL M ++ IAV+VGT+++D+R++ IP M V AL
Sbjct: 47 VILKRLFMSKVNKAPLSLSRLVEFMTG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRF 104
Query: 288 TEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKP 109
TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P S+TKP
Sbjct: 105 TERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKP 164
Query: 108 YVRTKGH--EHARPSRRS 61
YVR KG E AR R+S
Sbjct: 165 YVRHKGRKFEKARGKRKS 182
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 152 bits (368), Expect = 1e-37
Identities = 80/132 (60%), Positives = 96/132 (72%), Gaps = 3/132 (2%)
Frame = -2
Query: 447 MSRINRPPSSLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTIPKMTVAALHVTEKARAR 268
MS++N+ P SLSRL R+M ++G IAV+VGTV++DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 267 ILAAGGEILTFDQLALRAPT-GRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKG 91
I AGGE LTFDQLAL PT TVL++G +N REAV+HFGPAPG P SHTKPYVR G
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTG 118
Query: 90 H--EHARPSRRS 61
E AR RRS
Sbjct: 119 KKIEIARGRRRS 130
>At2g18850.1 68415.m02196 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 448
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 171 HYGDPEPVLSYVQWAHG 221
HYG P P+L+Y++ AHG
Sbjct: 346 HYGLPTPLLNYLRKAHG 362
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 249 EILTFDQLALRAPTGRKTVLVQGRRNAREAV 157
E L FD L L+ P+G+ LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At1g61900.2 68414.m06984 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 413
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 334 HIIGDCANDYSDQTLACRLL 393
HI G+C+N+ S+QT CR +
Sbjct: 271 HIGGNCSNELSNQTGCCRAM 290
>At1g61900.1 68414.m06983 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 433
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 334 HIIGDCANDYSDQTLACRLL 393
HI G+C+N+ S+QT CR +
Sbjct: 271 HIGGNCSNELSNQTGCCRAM 290
>At5g24290.2 68418.m02858 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 26.6 bits (56), Expect = 8.5
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +2
Query: 236 NVRISPPAAKMRARAFSVTCSAATVILGMV*SLTSLETVPTTTAIKPSRVGFFMWRAKRD 415
N SPP + F++ +TV G+ ++TSL V + +A S + A
Sbjct: 311 NTTQSPPQIQPDGERFAIELLKSTVYGGLTETITSLGVVSSASASGSSTMNIL---ALAV 367
Query: 416 KELGGRLIRLINNLRKM 466
L G LI L N + +
Sbjct: 368 ANLAGGLIVLAQNFQDL 384
>At5g24290.1 68418.m02857 integral membrane family protein contains
Pfam domain PF01988: Integral membrane protein
Length = 550
Score = 26.6 bits (56), Expect = 8.5
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +2
Query: 236 NVRISPPAAKMRARAFSVTCSAATVILGMV*SLTSLETVPTTTAIKPSRVGFFMWRAKRD 415
N SPP + F++ +TV G+ ++TSL V + +A S + A
Sbjct: 327 NTTQSPPQIQPDGERFAIELLKSTVYGGLTETITSLGVVSSASASGSSTMNIL---ALAV 383
Query: 416 KELGGRLIRLINNLRKM 466
L G LI L N + +
Sbjct: 384 ANLAGGLIVLAQNFQDL 400
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 237 FDQLALRAPTGRKTVLVQGRRNAREAV 157
FD L LR P+G+ LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 237 FDQLALRAPTGRKTVLVQGRRNAREAV 157
FD L LR P+G+ LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,922
Number of Sequences: 28952
Number of extensions: 218761
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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