Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O11
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15802.1 68417.m02405 expressed protein contains non-consensu... 46 1e-05
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 30 0.86
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 29 1.1
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 1.5
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.0
At2g31060.1 68415.m03790 elongation factor family protein contai... 29 2.0
At1g06590.1 68414.m00698 expressed protein 28 2.6
At1g19350.5 68414.m02408 brassinosteroid signalling positive reg... 27 4.6
At1g19350.4 68414.m02407 brassinosteroid signalling positive reg... 27 4.6
At1g19350.3 68414.m02405 brassinosteroid signalling positive reg... 27 4.6
At1g19350.1 68414.m02406 brassinosteroid signalling positive reg... 27 4.6
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 6.1
At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1) id... 27 6.1
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg... 27 6.1
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg... 27 6.1
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 27 6.1
At5g60610.1 68418.m07606 F-box family protein contains F-box dom... 27 8.1
At5g47660.1 68418.m05884 DNA-binding protein-related similar to ... 27 8.1
>At4g15802.1 68417.m02405 expressed protein contains non-consensus
AT-AC splice sites at intron 4
Length = 50
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/32 (59%), Positives = 27/32 (84%)
Frame = +1
Query: 244 EVTQYVQSLLQSMQDKFQSMSDQIINRIDEMG 339
++T +VQ+LLQ MQ +FQ+MSD II +ID+MG
Sbjct: 15 DMTAFVQNLLQQMQTRFQTMSDSIITKIDDMG 46
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 244 EVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQ 387
E T YV+ L QS + +SD+ + + G R++ L +++ DL+ +
Sbjct: 90 ESTFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCE 137
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 262 QSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENEK*GFKIL-YQSI 438
++ L+S + F + NRI+E+ T++D+ + +++ G ENE G + +S+
Sbjct: 922 ETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESL 981
Query: 439 LDTVGS 456
+ GS
Sbjct: 982 RECNGS 987
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 256 YVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVE 399
++ L++ +++ + +I RIDE+G + ++E +DL +A E
Sbjct: 74 FIDDLIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECE 121
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 269 SDCTYWVTSCIFFGSFAGVEYSFSVGIATVSVG 171
S+CT W + C GS A + G+ + G
Sbjct: 242 SECTIWTSDCNISGSHAAIGTDLGAGLVDLETG 274
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 313 IINRIDEMGT---RVDELEKNITDLMTQAGVENEK*GFKILYQS 435
++N++D R DE+E + DL G E+ F +LY S
Sbjct: 36 LLNKVDRPSVTEERCDEVESLVFDLFANCGATEEQLDFPVLYAS 79
>At1g06590.1 68414.m00698 expressed protein
Length = 916
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +1
Query: 256 YVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMT 384
Y+ SL +S D F+ +++IN++ E+G +E++ +TD +T
Sbjct: 51 YLLSLTKSCDDIFEPKLEKLINQLREVG---EEMDAWLTDHLT 90
>At1g19350.5 68414.m02408 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ + T +Q + QS + KF++
Sbjct: 253 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSSEFKFEN 305
>At1g19350.4 68414.m02407 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ + T +Q + QS + KF++
Sbjct: 253 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSSEFKFEN 305
>At1g19350.3 68414.m02405 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 357
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ + T +Q + QS + KF++
Sbjct: 275 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSSEFKFEN 327
>At1g19350.1 68414.m02406 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ + T +Q + QS + KF++
Sbjct: 253 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSSEFKFEN 305
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.1 bits (57), Expect = 6.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 187 AIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKN 366
A+PTEN ND N YV S D+ S + I E G +++EL +
Sbjct: 69 AVPTENATEEQVNDSLNNMLTQFYVPS-----TDEEGSFGVPNLGTIGEHGLKLEELNAD 123
Query: 367 ITDL 378
+ D+
Sbjct: 124 LFDV 127
>At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1)
identical to sugar-porter family protein 1 [Arabidopsis
thaliana] GI:14585699
Length = 474
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 269 SDCTYWVTSCIFFGSFAGVEYSFSVGIAT 183
S+C +T+C+ +F V SFS G+AT
Sbjct: 23 SECR--ITACVILSTFVAVCGSFSFGVAT 49
>At1g75080.2 68414.m08720 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ M T Q + QS + KF++
Sbjct: 254 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQMSPNTAAFQEIGQSSEFKFEN 306
>At1g75080.1 68414.m08719 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 142 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 300
IS+ +QP +PT ++ P+ M T Q + QS + KF++
Sbjct: 254 ISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQMSPNTAAFQEIGQSSEFKFEN 306
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 241 QEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAG-VENEK*GF 417
+++ + Q +S D +SDQ NRI+++ ++ + ++LM G E +
Sbjct: 429 EKMNKEYQKRYESAIDDICKLSDQFKNRINDLESKCKSIHDEHSNLMEVLGSTRLEASEW 488
Query: 418 KILYQSILDTVG 453
K Y+ LD G
Sbjct: 489 KRKYEGTLDENG 500
>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 247 VTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDL 378
VTQ++++LL+S+ + Q+ N IDE R + K + L
Sbjct: 250 VTQHIETLLESVTSVKRLTLRQLYNSIDEYKCRAGIVFKQLEQL 293
>At5g47660.1 68418.m05884 DNA-binding protein-related similar to
GTL1 [Arabidopsis thaliana] GI:2664198
Length = 398
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/94 (20%), Positives = 42/94 (44%)
Frame = +1
Query: 127 NRIRVISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMS 306
NRI L + +D+ + P + T + ++ +++ L+ SM + + M
Sbjct: 138 NRISWDGLSLSSSVDSSDSDSSPDVRKTVTGKRKRETRVKLEHFLEKLVGSMMKRQEKMH 197
Query: 307 DQIINRIDEMGTRVDELEKNITDLMTQAGVENEK 408
+Q+IN +++M E+ T+ +NE+
Sbjct: 198 NQLINVMEKMEVERIRREEAWRQQETERMTQNEE 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,125,379
Number of Sequences: 28952
Number of extensions: 157714
Number of successful extensions: 432
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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