Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O10
         (446 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    26   0.19 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.3  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   4.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   9.3  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 274 NVTRVTANTWPAACCTAVTSC 336
           N+ ++  NTW +  C  VT+C
Sbjct: 301 NIKKLIVNTWISLFCVKVTNC 321


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = +2

Query: 122 GVPDQLGALPTYPFPTGHVRSSHLCREGLPRAALC---SGDHERLLRARQPDG 271
           G P   GAL  YPF   H  S      G   AA C     D E+ L   +P G
Sbjct: 63  GFPSPRGALGAYPFRPMHQNSYTGYHLG-SYAANCPPSPKDDEKCLSLERPSG 114


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 PTYPFPTGHVRSSHLCREGLPR 214
           P+   PTG ++  + CRE   R
Sbjct: 69  PSVITPTGFLKECYCCRESFLR 90


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -1

Query: 338 GHDVTAVQHAAGHVFAVTRVTFHH 267
           GH + A  H   H  A      HH
Sbjct: 327 GHHIHAQHHVVNHHVAANGSLKHH 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,181
Number of Sequences: 336
Number of extensions: 2253
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)