Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O10
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 189 1e-49
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 186 1e-48
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 100 9e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 5e-10
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 1.7
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 4.0
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 4.0
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 25 4.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 5.3
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 7.0
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 25 7.0
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 24 9.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 9.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 189 bits (461), Expect = 1e-49
Identities = 84/105 (80%), Positives = 94/105 (89%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+H
Sbjct: 224 YENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV 347
E SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV
Sbjct: 284 ESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDV 328
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RTIQFVDWCPTGFK+GI + P
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPP 360
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 186 bits (454), Expect = 1e-48
Identities = 83/105 (79%), Positives = 93/105 (88%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
Y NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+H
Sbjct: 228 YENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFH 287
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV 347
E SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV
Sbjct: 288 ESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDV 332
Score = 48.4 bits (110), Expect = 5e-07
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +1
Query: 358 SLPSRPXRTIQFVDWCPTGFKVGINYQTP 444
S+ SR RTIQFVDWCPTGFK+GI Y+ P
Sbjct: 338 SIKSR--RTIQFVDWCPTGFKIGICYEPP 364
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 100 bits (240), Expect = 9e-23
Identities = 43/106 (40%), Positives = 67/106 (63%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + +
Sbjct: 222 YDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSF 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
+ +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVD 327
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.4 bits (135), Expect = 5e-10
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Frame = +3
Query: 45 NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHE 215
N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 216 QLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVN 350
+ +V ++ P NQMV +P + +++ + +G+ P DV+
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVH 334
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 234 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
+ ACFEP N C H K C L + KD N
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDEN 398
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 23 RHEVHQPQSSYRPDRIIDYRLSAFRRRPQC-RSNGVPDQLGALP 151
+H V+ P S+Y+ R ++ + A R PQ R N + D L + P
Sbjct: 265 QHSVNSPPSTYKHRRSLN-KSFATRSEPQTPRKNKIRDSLQSSP 307
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 365 GSDSRVDVLGHDVTAVQHAAGHVFAVT 285
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 23 RHEVHQPQSSYRPDRIIDYRLSAFRRRPQCRSNGVPDQLGALPTYP 160
R+ QP SS P+ + +L + + C +N +PD + + P P
Sbjct: 33 RNVAQQPNSSTVPEVKSNTQLESKQSSIDCNTNAIPDSV-SFPRLP 77
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 419 LKPVGHQSTNWMVRXGLDGSDSRVDV 342
L+P GH S NW + DS D+
Sbjct: 1639 LQPSGHDSDNWSQHGDEEEEDSEDDI 1664
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 102 ALNVDLTEFQTNLVPYPRIHFPLVT 176
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 365 GSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASVRDLRYREL 216
G D +D G D T GH A + +G L+ + R +EL
Sbjct: 41 GLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEE-RLKEL 89
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 57 GQIVSSITASLRFDGALNVDLTEFQTNLVPYP 152
G ++ + L+ +G L +D +TN P P
Sbjct: 500 GSTITGVNRELQDEGRLEIDAKSSKTNTPPSP 531
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 292 ANTWPAACCTAVTSC 336
A+ W A CT+V SC
Sbjct: 554 ASQWAAVACTSVVSC 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,640
Number of Sequences: 5004
Number of extensions: 36251
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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