Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O10
(446 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 202 6e-53
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 202 6e-53
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 202 6e-53
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 202 6e-53
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 199 6e-52
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 199 6e-52
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 190 4e-49
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 96 8e-21
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 96 1e-20
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 95 1e-20
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 95 1e-20
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 95 2e-20
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 95 2e-20
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 95 2e-20
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 95 3e-20
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 95 3e-20
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 52 1e-07
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 52 1e-07
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.35
At2g15020.1 68415.m01710 expressed protein and genefinder 28 2.5
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 202 bits (494), Expect = 6e-53
Identities = 89/106 (83%), Positives = 100/106 (94%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+H
Sbjct: 224 YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 51.2 bits (117), Expect = 3e-07
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RTIQFVDWCPTGFK GINYQ P
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPP 360
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 202 bits (494), Expect = 6e-53
Identities = 89/106 (83%), Positives = 100/106 (94%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+H
Sbjct: 224 YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 51.2 bits (117), Expect = 3e-07
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RTIQFVDWCPTGFK GINYQ P
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 202 bits (494), Expect = 6e-53
Identities = 89/106 (83%), Positives = 100/106 (94%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+H
Sbjct: 224 YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 51.2 bits (117), Expect = 3e-07
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RTIQFVDWCPTGFK GINYQ P
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPP 360
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 202 bits (494), Expect = 6e-53
Identities = 89/106 (83%), Positives = 100/106 (94%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+H
Sbjct: 224 YTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 51.2 bits (117), Expect = 3e-07
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RTIQFVDWCPTGFK GINYQ P
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPP 360
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 199 bits (486), Expect = 6e-52
Identities = 89/106 (83%), Positives = 97/106 (91%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYH
Sbjct: 224 YTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 50.8 bits (116), Expect = 4e-07
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RT+QFVDWCPTGFK GINYQ P
Sbjct: 339 RTVQFVDWCPTGFKCGINYQPP 360
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 199 bits (486), Expect = 6e-52
Identities = 89/106 (83%), Positives = 97/106 (91%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
YTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYH
Sbjct: 224 YTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 50.8 bits (116), Expect = 4e-07
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 379 RTIQFVDWCPTGFKVGINYQTP 444
RT+QFVDWCPTGFK GINYQ P
Sbjct: 339 RTVQFVDWCPTGFKCGINYQPP 360
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 190 bits (463), Expect = 4e-49
Identities = 83/106 (78%), Positives = 94/106 (88%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
Y+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYH
Sbjct: 224 YSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYH 283
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
EQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN
Sbjct: 284 EQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVN 329
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 ACCTAVTS--CPRTSTRLSLPSRPXRTIQFVDWCPTGFKVGINYQTP 444
ACC P+ + RTIQFVDWCPTGFK GINYQ P
Sbjct: 314 ACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPP 360
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 96.3 bits (229), Expect = 8e-21
Identities = 42/106 (39%), Positives = 65/106 (61%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 223 FGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 282
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 283 ISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVD 328
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 95.9 bits (228), Expect = 1e-20
Identities = 42/106 (39%), Positives = 65/106 (61%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 223 FGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 282
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 283 ISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 328
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 95.5 bits (227), Expect = 1e-20
Identities = 42/106 (39%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 SALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVD 327
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 95.5 bits (227), Expect = 1e-20
Identities = 42/106 (39%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 SALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVD 327
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/106 (38%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 RSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 327
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/106 (38%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 RSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 327
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/106 (38%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 RNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 327
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 94.7 bits (225), Expect = 3e-20
Identities = 41/106 (38%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 327
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 94.7 bits (225), Expect = 3e-20
Identities = 41/106 (38%), Positives = 64/106 (60%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYH 212
+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S +
Sbjct: 222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281
Query: 213 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVN 350
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+
Sbjct: 282 RALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVD 327
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAY 209
+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + +
Sbjct: 225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANV 284
Query: 210 HEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVN 350
+ +V ++ + N MV R+ KY++ + +G+V P V+
Sbjct: 285 IRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVH 336
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Frame = +3
Query: 33 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAY 209
+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + +
Sbjct: 225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANV 284
Query: 210 HEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVN 350
+ +V ++ + N MV R+ KY++ + +G+V P V+
Sbjct: 285 IRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVH 336
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.35
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 105 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 245
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 99 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 275
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,395
Number of Sequences: 28952
Number of extensions: 210948
Number of successful extensions: 582
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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