Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O09
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)                   27   7.5  
SB_18885| Best HMM Match : NAD_synthase (HMM E-Value=1.9e-07)          27   9.9  

>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
          Length = 831

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 184 KSKGPLVTRSNFSYLPKNSRQHRCSCSGDYLRYK*KSKANSQNFNHSL 41
           KSKG   +++ F+Y+PK ++ +    S D + +  +SK    + ++ L
Sbjct: 236 KSKGMPQSQTGFTYVPKKAQDYYGLDSFDVINHSTQSKTPLSSMDYGL 283


>SB_18885| Best HMM Match : NAD_synthase (HMM E-Value=1.9e-07)
          Length = 145

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 386 RSFILHCVLNFSYGTLIIVL 327
           R+FI HCV  +++ +LI +L
Sbjct: 105 RAFIFHCVEKYNFSSLITIL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,357
Number of Sequences: 59808
Number of extensions: 232223
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)