Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O09
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical...    28   2.8  
AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical ...    28   2.8  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   3.8  

>AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical
           protein Y45F10B.5 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 34  LQAMNG*NFDCLLWIFICTVGNL 102
           ++ MNG  F+ +LW+ +C + NL
Sbjct: 201 IKLMNGSIFNLILWLLLCIISNL 223


>AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical
           protein D1069.4 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = -2

Query: 280 KHLPRKTVH*VGCYTVFFMMFNF-ITRIPNYYRKSKGPLVTRSNFSYLPKNSRQ-----H 119
           KH+ + TV     Y +  M+  F +T +P  +      L T     Y+ KN  +      
Sbjct: 264 KHVKKTTVPDRTTYMLIIMLVVFLVTELPQGFLALLNGLYTGDVNIYIYKNLSELLDFLS 323

Query: 118 RCSCSGDYLRYK*KSKANSQNFNHSLL 38
             +CS D+L Y   S    Q F H L+
Sbjct: 324 LINCSVDFLLYCVMSSRYRQTFGHMLI 350


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 76   IFICTVGNLRNSCTDVDGNFS 138
            + +CT  NL NSC  +DG  S
Sbjct: 2018 VTVCTSLNLTNSCASIDGGLS 2038


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 76   IFICTVGNLRNSCTDVDGNFS 138
            + +CT  NL NSC  +DG  S
Sbjct: 2018 VTVCTSLNLANSCASIDGGLS 2038


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,932
Number of Sequences: 27780
Number of extensions: 193687
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)