Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O09
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    29   1.1  
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    28   3.5  

>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 127 RQHRCSCSGDYLRYK-*KSKANSQNF 53
           RQ RCSC G  ++ K  K K+N+Q+F
Sbjct: 177 RQQRCSCCGQIMKLKSDKPKSNNQSF 202


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  DCLLWIFICTVGNLRNSCTDVDGNFSVD 144
           DC  W  +  V N R +   VDG+FS+D
Sbjct: 511 DCCFWSGVFCVNNDRVTQLSVDGDFSLD 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,096,728
Number of Sequences: 28952
Number of extensions: 164685
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)