Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O08
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    24   7.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   7.8  

>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 135 MVFLFNHFCY*IICFKLIHFYSFIKCLILIYISNQSCNYSIKA 7
           +V  F+H     + F ++ FYSF   ++ ++ +NQ   + I +
Sbjct: 123 IVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISS 165


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 111 CY*IICFKLIHFYSFIKCLILIYISN 34
           CY  +C K+ HF  F  C+     +N
Sbjct: 511 CYGDLCMKVAHFPQFRSCVFQRLFTN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,179
Number of Sequences: 5004
Number of extensions: 18854
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)